Bayesian calibration, validation, and uncertainty quantification of diffuse interface models of tumor growth

被引:78
作者
Hawkins-Daarud, Andrea [1 ]
Prudhomme, Serge [2 ]
van der Zee, Kristoffer G. [3 ]
Oden, J. Tinsley [2 ]
机构
[1] Northwestern Univ, Chicago, IL 60611 USA
[2] Univ Texas Austin, Austin, TX 78712 USA
[3] Eindhoven Univ Technol, NL-5600 MB Eindhoven, Netherlands
基金
美国国家科学基金会;
关键词
Bayesian probability; Calibration; Validation; Uncertainty quantification; Tumor growth models; FINITE-DIFFERENCE; SIMULATION; MECHANICS; INVASION;
D O I
10.1007/s00285-012-0595-9
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The idea that one can possibly develop computational models that predict the emergence, growth, or decline of tumors in living tissue is enormously intriguing as such predictions could revolutionize medicine and bring a new paradigm into the treatment and prevention of a class of the deadliest maladies affecting humankind. But at the heart of this subject is the notion of predictability itself, the ambiguity involved in selecting and implementing effective models, and the acquisition of relevant data, all factors that contribute to the difficulty of predicting such complex events as tumor growth with quantifiable uncertainty. In this work, we attempt to lay out a framework, based on Bayesian probability, for systematically addressing the questions of Validation, the process of investigating the accuracy with which a mathematical model is able to reproduce particular physical events, and Uncertainty quantification, developing measures of the degree of confidence with which a computer model predicts particular quantities of interest. For illustrative purposes, we exercise the process using virtual data for models of tumor growth based on diffuse-interface theories of mixtures utilizing virtual data.
引用
收藏
页码:1457 / 1485
页数:29
相关论文
共 39 条
[1]   On the closure of mass balance models for tumor growth [J].
Ambrosi, D ;
Preziosi, L .
MATHEMATICAL MODELS & METHODS IN APPLIED SCIENCES, 2002, 12 (05) :737-754
[2]   On the mechanics of a growing tumor [J].
Ambrosi, D ;
Mollica, F .
INTERNATIONAL JOURNAL OF ENGINEERING SCIENCE, 2002, 40 (12) :1297-1316
[3]   Continuous and discrete mathematical models of tumor-induced angiogenesis [J].
Anderson, ARA ;
Chaplain, MAJ .
BULLETIN OF MATHEMATICAL BIOLOGY, 1998, 60 (05) :857-899
[4]  
[Anonymous], 1989, Internat. Ser. Numer. Math, DOI DOI 10.1007/978-3-0348-9148-6_3
[5]  
[Anonymous], 2021, Bayesian data analysis
[6]  
[Anonymous], 2010, Verification and Validation in Scientific Computing, DOI DOI 10.1017/CBO9780511760396
[7]  
[Anonymous], 2009, SAND20102183 SAND NA
[8]   A mixture theory for the genesis of residual stresses in growing tissues I: A general formulation [J].
Araujo, RP ;
McElwain, DLS .
SIAM JOURNAL ON APPLIED MATHEMATICS, 2005, 65 (04) :1261-1284
[9]   A systematic approach to model validation based on Bayesian updates and prediction related rejection criteria [J].
Babuska, I. ;
Nobile, F. ;
Tempone, R. .
COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING, 2008, 197 (29-32) :2517-2539
[10]   A stochastic collocation method for elliptic partial differential equations with random input data [J].
Babuska, Ivo ;
Nobile, Fabio ;
Tempone, Raul .
SIAM JOURNAL ON NUMERICAL ANALYSIS, 2007, 45 (03) :1005-1034