IsUnstruct: prediction of the residue status to be ordered or disordered in the protein chain by a method based on the Ising model

被引:40
作者
Lobanov, Michail Yu [1 ]
Sokolovskiy, Igor V. [1 ]
Galzitskaya, Oxana V. [1 ]
机构
[1] Russian Acad Sci, Inst Prot Res, Pushchino 142290, Moscow Region, Russia
基金
俄罗斯基础研究基金会;
关键词
intrinsically disordered proteins; disordered residues; Ising model; structured PDB; library of disordered pattern; INTRINSICALLY UNSTRUCTURED PROTEINS; ACCURATE PREDICTION; SECONDARY STRUCTURE; WEB SERVER; SEQUENCE; REGIONS; DATABASE; BINDING; HELIX;
D O I
10.1080/07391102.2012.718529
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
[No abstract available]
引用
收藏
页码:1034 / 1043
页数:10
相关论文
共 50 条
[31]   An Approach of Protein Secondary Structure Prediction Based on Homology Analysis Method in Compound Pyramid Model [J].
Yang, Bingru ;
Qu, Wu ;
Zhai, Yun ;
Sui, Haifeng .
2010 2ND INTERNATIONAL CONFERENCE ON COMPUTER AND AUTOMATION ENGINEERING (ICCAE 2010), VOL 1, 2010, :450-454
[32]   Prediction of cassava protein interactome based on interolog method [J].
Thanasomboon, Ratana ;
Kalapanulak, Saowalak ;
Netrphan, Supatcharee ;
Saithong, Treenut .
SCIENTIFIC REPORTS, 2017, 7
[33]   RGN: Residue-Based Graph Attention and Convolutional Network for Protein-Protein Interaction Site Prediction [J].
Wang, Shuang ;
Chen, Wenqi ;
Han, Peifu ;
Li, Xue ;
Song, Tao .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2022, 62 (23) :5961-5974
[34]   KScons: a Bayesian approach for protein residue contact prediction using the knob-socket model of protein tertiary structure [J].
Li, Qiwei ;
Dahl, David B. ;
Vannucci, Marina ;
Joo, Hyun ;
Tsai, Jerry W. .
BIOINFORMATICS, 2016, 32 (24) :3774-3781
[35]   Computational Prediction of Protein Epsilon Lysine Acetylation Sites Based on a Feature Selection Method [J].
Gao, Jianzhao ;
Tao, Xue-Wen ;
Zhao, Jia ;
Feng, Yuan-Ming ;
Cai, Yu-Dong ;
Zhang, Ning .
COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING, 2017, 20 (07) :629-637
[36]   A protein structural class prediction method based on novel features [J].
Zhang, Lichao ;
Zhao, Xiqiang ;
Kong, Liang .
BIOCHIMIE, 2013, 95 (09) :1741-1744
[37]   DeepDRP: Prediction of intrinsically disordered regions based on integrated view deep learning architecture from transformer-enhanced and protein information [J].
Yang, Zexi ;
Wang, Yan ;
Ni, Xinye ;
Yang, Sen .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2023, 253
[38]   PPI-Detect: A Support Vector Machine Model for Sequence-Based Prediction of Protein-Protein Interactions [J].
Romero-Molina, Sandra ;
Ruiz-Blanco, Yasser B. ;
Harms, Mirja ;
Muench, Jan ;
Sanchez-Garcia, Elsa .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2019, 40 (11) :1233-1242
[39]   A prediction model of nonclassical secreted protein based on deep learning [J].
Zhang, Fan ;
Liu, Chaoyang ;
Wang, Binjie ;
He, Yiru ;
Zhang, Xinhong .
JOURNAL OF CHEMOMETRICS, 2024, 38 (08)
[40]   POLAT: Protein function prediction based on soft mask graph network and residue-Label ATtention [J].
Liu, Yang ;
Zhang, Yi ;
Chen, Zihao ;
Peng, Jing .
COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2024, 110