Prediction of Venous Thrombosis Chinese Electronic Medical Records Based on Deep Learning and Rule Reasoning

被引:2
|
作者
Chen, Jiawei [1 ]
Yang, Jianhua [1 ]
He, Jianfeng [1 ]
机构
[1] Kunming Univ Sci & Technol, Fac Informat Engn & Automat, Kunming 650032, Yunnan, Peoples R China
来源
APPLIED SCIENCES-BASEL | 2022年 / 12卷 / 21期
基金
中国国家自然科学基金;
关键词
venous thromboembolism (VTE); deep learning; information extraction; electronic medical record (EMR); joint extraction; RELATION EXTRACTION; JOINT ENTITY;
D O I
10.3390/app122110824
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Aiming at the problems of heavy workload of medical staff in the process of venous thrombosis prevention and treatment, error evaluation, missed evaluation, and inconsistent evaluation, we propose a joint extraction model of Chinese electronic medical records based on deep learning. The approach was to first construct the handshake annotation, then use bidirectional encoder representations from transformers (BERT) as the word vector embedding, then use the bidirectional long short-term memory network (BiLSTM) to extract the contextual features, and then integrate the contextual information into the process of normalizing the word vector. Experiments show that our proposed method achieves 93.3% and 94.3% of entity and relation F1 on the constructed electronic medical record dataset, which effectively improves the effect of medical information extraction. At the same time, the venous thromboembolism (VTE) risk factors extracted from the electronic medical record were used to judge the risk factors of venous thrombosis by means of rule reasoning. Compared with the assessment of clinicians on the Wells and Geneva scales, the accuracy rates of 84.7% and 86.1% were obtained.
引用
收藏
页数:11
相关论文
共 50 条
  • [1] Extracting Clinical entities and their assertions from Chinese Electronic Medical Records Based on Machine Learning
    Wang, Jianhong
    Peng, Yousong
    Liu, Bin
    Wu, Zhiqiang
    Deng, Lizong
    Jiang, Taijiao
    PROCEEDINGS OF THE 2016 3RD INTERNATIONAL CONFERENCE ON MATERIALS ENGINEERING, MANUFACTURING TECHNOLOGY AND CONTROL, 2016, 67 : 1503 - 1508
  • [2] A Multiclass Classification Method Based on Deep Learning for Named Entity Recognition in Electronic Medical Records
    Dong, Xishuang
    Qian, Lijun
    Guan, Yi
    Huang, Lei
    Yu, Qiubin
    Yang, Jinfeng
    2016 NEW YORK SCIENTIFIC DATA SUMMIT (NYSDS), 2016,
  • [3] Automating venous thromboembolism risk assessment: a dual-branch deep learning method using electronic medical records
    Yang, Jianhua
    He, Jianfeng
    Zhang, Hongjiang
    FRONTIERS IN MEDICINE, 2023, 10
  • [4] Treatment effect prediction with adversarial deep learning using electronic health records
    Chu, Jiebin
    Dong, Wei
    Wang, Jinliang
    He, Kunlun
    Huang, Zhengxing
    BMC MEDICAL INFORMATICS AND DECISION MAKING, 2020, 20 (Suppl 4)
  • [5] Deep Learning Prediction of Mild Cognitive Impairment using Electronic Health Records
    Fouladvand, Sajjad
    Mielke, Michelle M.
    Vassilaki, Maria
    St Sauver, Jennifer
    Petersen, Ronald C.
    Sohn, Sunghwan
    2019 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2019, : 799 - 806
  • [6] Treatment effect prediction with adversarial deep learning using electronic health records
    Jiebin Chu
    Wei Dong
    Jinliang Wang
    Kunlun He
    Zhengxing Huang
    BMC Medical Informatics and Decision Making, 20
  • [7] Deep Learning with Heterogeneous Graph Embeddings for Mortality Prediction from Electronic Health Records
    Wanyan, Tingyi
    Honarvar, Hossein
    Azad, Ariful
    Ding, Ying
    Glicksberg, Benjamin S.
    DATA INTELLIGENCE, 2021, 3 (03) : 329 - 339
  • [8] Boosting Deep Learning Risk Prediction with Generative Adversarial Networks for Electronic Health Records
    Che, Zhengping
    Cheng, Yu
    Zha, Shuangfei
    Sun, Zhaonan
    Liu, Yan
    2017 17TH IEEE INTERNATIONAL CONFERENCE ON DATA MINING (ICDM), 2017, : 787 - 792
  • [9] A Survey of Deep Learning for Electronic Health Records
    Xu, Jiabao
    Xi, Xuefeng
    Chen, Jie
    Sheng, Victor S.
    Ma, Jieming
    Cui, Zhiming
    APPLIED SCIENCES-BASEL, 2022, 12 (22):
  • [10] A deep learning approach for length of stay prediction in clinical settings from medical records
    Zebin, Tahmina
    Rezvy, Shahadate
    Chaussalet, Thierry J.
    2019 16TH IEEE INTERNATIONAL CONFERENCE ON COMPUTATIONAL INTELLIGENCE IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY - CIBCB 2019, 2019, : 59 - 63