A long-range electrostatic potential based on the Wolf method charge-neutral condition

被引:18
作者
Yonezawa, Yasushige [1 ]
机构
[1] Kinki Univ, High Pressure Prot Res Ctr, Inst Adv Technol, Wakayama 6496493, Japan
关键词
MOLECULAR-DYNAMICS SIMULATIONS; PARTICLE MESH EWALD; DIELECTRIC-PROPERTIES; WATER; SYSTEMS; COULOMB; SUMMATION;
D O I
10.1063/1.4729748
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Molecular simulations rely heavily on a long range electrostatic Coulomb interaction. The Coulomb potential decays inversely with distance, indicating infinite effective range. In practice, molecular simulations do not directly take into account such an infinite interaction. Therefore, the Ewald, fast multipole, and cutoff methods are frequently used. Although cutoff methods are implemented easily and the calculations are fast, it has been pointed out that they produce serious artifacts. Wolf and coworkers recently discovered one source of the artifacts. They found that when the total charge in a cutoff sphere disappeared, the cutoff error is dramatically suppressed. The Wolf method uses the charge-neutral principle combined with a potential damping that is realized using a complementary error function. To date, many molecular simulation studies have demonstrated the accuracy and reliability of the Wolf method. We propose a novel long-range potential that is constructed only from the charge-neutral condition of the Wolf method without potential damping. We also show that three simulation systems, in which involve liquid sodium-chloride, TIP3P water, and a charged protein in explicit waters with neutralized ions using the new potential, provide accurate statistical and dielectric properties when compared with the particle mesh Ewald method. (C) 2012 American Institute of Physics. [http://dx.doi.org/10.1063/1.4729748]
引用
收藏
页数:8
相关论文
共 50 条
  • [31] Comparison of different schemes to treat long-range electrostatic interactions in molecular dynamics simulations of a protein crystal
    Walser, R
    Hünenberger, PH
    van Gunsteren, WF
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2001, 43 (04) : 509 - 519
  • [32] Modulation of Surface Charge Transfer through Competing Long-Range Repulsive versus Short-Range Attractive Interactions
    Fraxedas, J.
    Garcia-Gil, S.
    Monturet, S.
    Lorente, N.
    Fernandez-Torrente, I.
    Franke, K. J.
    Pascual, J. I.
    Vollmer, A.
    Blum, R. -P.
    Koch, N.
    Ordejon, P.
    JOURNAL OF PHYSICAL CHEMISTRY C, 2011, 115 (38) : 18640 - 18648
  • [33] A simplified charge projection scheme for long-range electrostatics in ab initio QM/MM calculations
    Pan, Xiaoliang
    Nam, Kwangho
    Epifanovsky, Evgeny
    Simmonett, Andrew C.
    Rosta, Edina
    Shao, Yihan
    JOURNAL OF CHEMICAL PHYSICS, 2021, 154 (02)
  • [34] A Long-Range Electric Field Solver for Molecular Dynamics Based on Atomistic-to-Continuum Modeling
    Templeton, Jeremy A.
    Jones, Reese E.
    Lee, Jonathan W.
    Zimmerman, Jonathan A.
    Wong, Bryan M.
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2011, 7 (06) : 1736 - 1749
  • [35] Isotropic Periodic Sum Treatment of Long-Range Electrostatic Interactions in Combined Quantum Mechanical and Molecular Mechanical Calculations
    Ojeda-May, Pedro
    Pu, Jingzhi
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2014, 10 (01) : 134 - 145
  • [36] A GPU-based large-scale Monte Carlo simulation method for systems with long-range interactions
    Liang, Yihao
    Xing, Xiangjun
    Li, Yaohang
    JOURNAL OF COMPUTATIONAL PHYSICS, 2017, 338 : 252 - 268
  • [37] Surface Waves Prediction Based on Long-Range Acoustic Backscattering in a Mid-Frequency Range
    Ermoshkin, Alexey V.
    Kosteev, Dmitry A.
    Ponomarenko, Alexander A.
    Razumov, Dmitrii D.
    Salin, Mikhail B.
    JOURNAL OF MARINE SCIENCE AND ENGINEERING, 2022, 10 (06)
  • [38] Classical simulation of deposition of thiophene oligomers on TiO2-anatase: Relevance of long-range electrostatic interactions
    Alves-Santos, Marcelo
    Caldas, Marilia J.
    SYNTHETIC METALS, 2009, 159 (21-22) : 2302 - 2305
  • [39] A refined polarizable water model for the coarse-grained MARTINI force field with long-range electrostatic interactions
    Michalowsky, Julian
    Schaefer, Lars V.
    Holm, Christian
    Smiatek, Jens
    JOURNAL OF CHEMICAL PHYSICS, 2017, 146 (05)
  • [40] Molecular modeling of aqueous electrolytes at interfaces: Effects of long-range dispersion forces and of ionic charge rescaling
    Le Breton, Guillaume
    Joly, Laurent
    JOURNAL OF CHEMICAL PHYSICS, 2020, 152 (24)