POPART: full-feature software for haplotype network construction

被引：4703
作者：
Leigh, Jessica W. [1 ]
Bryant, David [1 ]
机构：
[1] Univ Otago, Dept Math & Stat, Dunedin 9054, New Zealand
来源：
METHODS IN ECOLOGY AND EVOLUTION | 2015年 / 6卷 / 09期
关键词：
AMOVA; haplotype networks; phylogeography; polynesian expansion; population genetics; TCS; POPULATION-GENETICS; DNA POLYMORPHISM; SEQUENCE DATA; OCEANIA; PACKAGE; TREES; MTDNA;
D O I：
10.1111/2041-210X.12410
中图分类号：
Q14 [生态学（生物生态学）];
学科分类号：
071012 ; 0713 ;
摘要：
1. Haplotype networks are an intuitive method for visualising relationships between individual genotypes at the population level. 2. Here, we present POPART, an integrated software package that provides a comprehensive implementation of haplotype network methods, phylogeographic visualisation tools and standard statistical tests, together with publication-ready figure production. 3. POPART also provides a platform for the implementation and distribution of new network-based methods - we describe one such new method, integer neighbour-joining. 4. The software is open source and freely available for all major operating systems.
引用
收藏
页码：1110 / 1116
页数：7
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