Bagging for Biclustering: Application to Microarray Data

被引:0
作者
Hanczar, Blaise [1 ]
Nadif, Mohamed [1 ]
机构
[1] Univ Paris 05, LIPADE, F-75006 Paris, France
来源
MACHINE LEARNING AND KNOWLEDGE DISCOVERY IN DATABASES, PT I: EUROPEAN CONFERENCE, ECML PKDD 2010 | 2010年 / 6321卷
关键词
D O I
暂无
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
One of the major tools of transcriptomics is the biclustering that simultaneously constructs a partition of both examples and genes. Several methods have been proposed for microarray data analysis that enables to identify groups of genes with similar expression pro?les only under a subset of examples. We propose to improve the quality of these biclustering methods by adapting the approach of bagging to biclustering problems. The principle consists in generating a set of biclusters and aggregating the results. Our method has been tested with success on artificial and real datasets.
引用
收藏
页码:490 / 505
页数:16
相关论文
共 50 条
[41]   Cuckoo Search with Mutation for Biclustering of Microarray Gene Expression Data [J].
Rengeswaran, Balamurugan ;
Mathaiyan, Natarajan ;
Kandasamy, Premalatha .
INTERNATIONAL ARAB JOURNAL OF INFORMATION TECHNOLOGY, 2017, 14 (03) :300-306
[42]   GPU-based biclustering for microarray data analysis in neurocomputing [J].
Liu, Benben ;
Xin, Yao ;
Cheung, Ray C. C. ;
Yan, Hong .
NEUROCOMPUTING, 2014, 134 :239-246
[43]   DNA microarray data analysis: A novel biclustering algorithm approach [J].
Tchagang, Alain B. ;
Tewfik, Ahmed H. .
Eurasip Journal on Applied Signal Processing, 2006, 2006
[44]   DNA microarray data analysis: A novel biclustering algorithm approach [J].
Tchagang, Alain B. ;
Tewfik, Ahmed H. .
EURASIP JOURNAL ON APPLIED SIGNAL PROCESSING, 2006, 2006 (1)
[45]   Robust biclustering algorithm (ROBA) for DNA microarray data analysis [J].
Tchagang, Alain B. ;
Tewfik, AhmedH. .
2005 IEEE/SP 13TH WORKSHOP ON STATISTICAL SIGNAL PROCESSING (SSP), VOLS 1 AND 2, 2005, :918-923
[46]   A novel biclustering algorithm of binary microarray data: BiBinCons and BiBinAlter [J].
Ben Saber, Haifa ;
Elloumi, Mourad .
BIODATA MINING, 2015, 8
[47]   Novel Probabilistic Encoding for EAs Applied to Biclustering of Microarray Data [J].
Marcozzi, Michael ;
Divina, Federico ;
Aguilar-Ruiz, Jesus S. ;
Vanhoof, Wim .
GECCO-2011: PROCEEDINGS OF THE 13TH ANNUAL GENETIC AND EVOLUTIONARY COMPUTATION CONFERENCE, 2011, :339-346
[48]   A novel biclustering algorithm of binary microarray data: BiBinCons and BiBinAlter [J].
Haifa Ben Saber ;
Mourad Elloumi .
BioData Mining, 8
[49]   Optimisation algorithms for microarray biclustering [J].
Perrin, Dimitri ;
Duhamel, Christophe .
2013 35TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC), 2013, :592-595
[50]   A novel microarray biclustering algorithm [J].
Tsai, Chieh-Yuan ;
Chiu, Chuang-Cheng .
World Academy of Science, Engineering and Technology, 2010, 65 :256-262