Biogenesis and Transcriptional Regulation of Long Noncoding RNAs in the Human Immune System

被引:35
|
作者
Spurlock, Charles F., III [1 ]
Crooke, Philip S., III [2 ]
Aune, Thomas M. [1 ]
机构
[1] Vanderbilt Univ, Dept Med, Sch Med, Nashville, TN 37232 USA
[2] Vanderbilt Univ, Dept Math, Nashville, TN 37232 USA
基金
美国国家卫生研究院;
关键词
SUPER-ENHANCERS; B-CELL; FUNCTIONAL-ANALYSIS; GENE-EXPRESSION; CHROMATIN; REVEALS; ACTIVATION; PRINCIPLES; DISCOVERY; EVOLUTION;
D O I
10.4049/jimmunol.1600970
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
The central dogma of molecular biology states that DNA makes RNA makes protein. Discoveries over the last quarter of a century found that the process of DNA transcription into RNA gives rise to a diverse array of functional RNA species, including genes that code for protein and noncoding RNAs. For decades, the focus has been on understanding how protein-coding genes are regulated to influence protein expression. However, with the completion of the Human Genome Project and follow-up ENCODE data, it is now appreciated that only 2-3% of the genome codes for protein-coding gene exons and that the bulk of the transcribed genome, apart from ribosomal RNAs, is at the level of noncoding RNA genes. In this article, we focus on the biogenesis and regulation of a distinct class of noncoding RNA molecules termed long, noncoding RNAs in the context of the immune system.
引用
收藏
页码:4509 / 4517
页数:9
相关论文
共 50 条
  • [31] Regulation of the mammalian epigenome by long noncoding RNAs
    Whitehead, Joanne
    Pandey, Gaurav Kumar
    Kanduri, Chandrasekhar
    BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS, 2009, 1790 (09): : 936 - 947
  • [32] Strategies to identify long noncoding RNAs involved in gene regulation
    Lee, Catherine
    Kikyo, Nobuaki
    CELL AND BIOSCIENCE, 2012, 2
  • [33] Strategies to Annotate and Characterize Long Noncoding RNAs: Advantages and Pitfalls
    Cao, Huifen
    Wahlestedt, Claes
    Kapranov, Philipp
    TRENDS IN GENETICS, 2018, 34 (09) : 704 - 721
  • [34] Enhancer RNAs: mechanisms in transcriptional regulation and functions in diseases
    Li, Qianhui
    Liu, Xin
    Wen, Jingtao
    Chen, Xi
    Xie, Bumin
    Zhao, Yang
    CELL COMMUNICATION AND SIGNALING, 2023, 21 (01)
  • [35] Genome-Wide Analysis of Human Long Noncoding RNAs: A Provocative Review
    Ponting, Chris P.
    Haerty, Wilfried
    ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, 2022, 23 : 153 - 172
  • [36] Long Noncoding RNAs Promote Transcriptional Poising of Inducible Genes
    Cloutier, Sara C.
    Wang, Siwen
    Ma, Wai Kit
    Petell, Christopher J.
    Tran, Elizabeth J.
    PLOS BIOLOGY, 2013, 11 (11)
  • [37] Long Noncoding RNAs in the Pathophysiology of Ischemic Stroke
    Akella, Aparna
    Bhattarai, Sunil
    Dharap, Ashutosh
    NEUROMOLECULAR MEDICINE, 2019, 21 (04) : 474 - 483
  • [38] The roles of long noncoding RNAs in the regulation of OCT4 expression
    Zhou, Rui-Ting
    Ni, Yi-Ran
    Zeng, Fan-Jun
    STEM CELL RESEARCH & THERAPY, 2022, 13 (01)
  • [39] Cytokines and Long Noncoding RNAs
    Carpenter, Susan
    Fitzgerald, Katherine A.
    COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY, 2018, 10 (06):
  • [40] Regulation of Long Noncoding RNAs Responsive to Phytoplasma Infection in Paulownia tomentosa
    Fan, Guoqiang
    Cao, Yabing
    Wang, Zhe
    INTERNATIONAL JOURNAL OF GENOMICS, 2018, 2018