Comparative analysis on gene expression profiles in cattle subcutaneous fat tissues

被引：39

作者：

Taniguchi, Masaaki ^{[1
]}

Guan, Le Luo ^{[1
]}

Basarab, John A. ^{[2
]}

Dodson, Michael V. ^{[3
]}

Moore, Stephen S. ^{[1
]}

机构：

[1] Univ Alberta, Dept Agr Food & Nutr Sci, Edmonton, AB T6G 2P5, Canada

[2] Lacombe Res Ctr, Alberta Agr & Food, Lacombe, AB T4L 1W1, Canada

[3] Washington State Univ, Dept Anim Sci, Pullman, WA 99164 USA

来源：

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS | 2008年 / 3卷 / 04期

关键词：

Backfat thickness; Beef cattle; Fat development; Gene expression; Microarray; Quantitative real-time PCR;

D O I：

10.1016/j.cbd.2008.06.002

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Fat related carcass traits are important to the beef industry due to their association with value of the meat. In this study, we attempted to discover the genes that are associated with fat metabolism by identification of differentially expressed genes in subcutaneous adipose tissues of beef steers with different backfat thicknesses. Microarray analysis was performed using a bovine specific oligo-platform containing 8329 probes. In total, 360 differentially expressed genes were identified and their functions were characterized by bioinformatical tools to elucidate molecular pathways. 45 out of 360 differentially expressed genes were found to be involved in 82 KEGG pathways. Validation of 6 selected differentially expressed genes by quantitative real-time PCR revealed correlations between backfat thickness and their expression levels. Our results suggest that expression differences of novel genes and the genes that have been known as genetic markers for fat related traits may be associated with backfat development in beef cattle. Moreover, the gene expression differences were also compared between two cattle crossbreds. The observed different association between the expression of selected genes and breed types suggested that the mechanisms of fat metabolism may differ in response to genotypes. (C) 2008 Elsevier Inc. All rights reserved.

引用

页码：251 / 256

页数：6

共 32 条

[1]

*AGR CAN, 1992, CAN GAZ 2, V126, P3821

[2] Relationships between progeny residual feed intake and dam productivity traits [J].

Basarab, J. A. ;

McCartney, D. ;

Okine, E. K. ;

Baron, V. S. .

CANADIAN JOURNAL OF ANIMAL SCIENCE, 2007, 87 (04) :489-502

[3]

Berg RT, 1976, NEW CONCEPTS CATTLE

[4] Regulation of triglyceride metabolism. III. Emerging role of lipid droplet protein ADFP in health and disease [J].

Chang, Benny Hung-Junn ;

Chan, Lawrence .

AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY, 2007, 292 (06) :G1465-G1468

[5]

CHOMCZYNSKI P, 1987, ANAL BIOCHEM, V162, P156, DOI 10.1016/0003-2697(87)90021-2

[6] ACRP30 is secreted from 3T3-L1 adipocytes via a Rab11-dependent pathway [J].

Clarke, M ;

Ewart, MA ;

Santy, LC ;

Prekeris, R ;

Gould, GW .

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2006, 342 (04) :1361-1367

[7] PPAR-γ and GLUT-4 expression as developmental regulators/markers for preadipocyte differentiation into an adipocyte [J].

Fernhough, M. E. ;

Okine, E. ;

Hausman, G. ;

Vierck, J. L. ;

Dodson, M. V. .

DOMESTIC ANIMAL ENDOCRINOLOGY, 2007, 33 (04) :367-378

[8] Mature adipocytes may be a source of stem cells for tissue engineering [J].

Fernyhough, M. E. ;

Hausman, G. J. ;

Guan, L. L. ;

Okine, E. ;

Moore, S. S. ;

Dodson, M. V. .

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2008, 368 (03) :455-457

[9] Proteolytic cleavage product of 30-kDa adipocyte complement-related protein increases fatty acid oxidation in muscle and causes weight loss in mice [J].

Fruebis, J ;

Tsao, TS ;

Javorschi, S ;

Ebbets-Reed, D ;

Erickson, MRS ;

Yen, FT ;

Bihain, BE ;

Lodish, HF .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (04) :2005-2010

[10]

GABLER NK, 2008, J NUTR BIOCH 0512

← 1 2 3 4 →