Intermolecular noncovalent interactions with carbon in solution

被引:8
|
作者
Dutta, Juhi [1 ,2 ]
Routray, Chinmay [1 ,2 ]
Pandey, Shalini [1 ,2 ]
Biswal, Himansu S. [1 ,2 ]
机构
[1] Natl Inst Sci Educ & Res NISER, Sch Chem Sci, Via Jatni, Bhubaneswar 752050, India
[2] Homi Bhabha Natl Inst, Training Sch Complex, Anushakti Nagar, Mumbai 400094, India
关键词
FORCE-FIELD GAFF; HYDROGEN-BOND; CRYSTAL-STRUCTURE; SPECTROSCOPIC EVIDENCE; SOLID-STATE; NMR; PI; CONFORMATION; COMPLEXES; MECHANISM;
D O I
10.1039/d2sc05431k
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
One of the most familiar carbon-centered noncovalent interactions (NCIs) involving an antibonding pi*-orbital situated at the Burgi-Dunitz angle from the electron donor, mostly lone pairs of electrons, is known as n -> pi* interactions, and if it involves a sigma* orbital in a linear fashion, then it is known as the carbon bond. These NCIs can be intra- or inter-molecular and are usually weak in strength but have a paramount effect on the structure and function of small-molecular crystals and proteins. Surprisingly, the experimental evidence of such interactions in the solution phase is scarce. It is even difficult to determine the interaction energy in the solution. Using NMR spectroscopy aided with molecular dynamics (MD) simulation and high-level quantum mechanical calculations, herein we provide the experimental evidence of intermolecular carbon-centered NCIs in solution. The challenge was to find appropriate heterodimers that could sustain room temperature thermal energy and collisions from the solvent molecules. However, after several trial model compounds, the pyridine-N-oxide:dimethyltetracyanocyclopropane (PNO-DMTCCP) complex was found to be a good candidate for the investigation. NBO analyses show that the PNO:DMTCCP complex is stabilized mainly by intermolecular n -> pi* interaction when a weaker carbon bond gives extra stability to the complex. From the NMR study, it is observed that the NCIs between DMTCCP and PNO are enthalpy driven with an enthalpy change of -28.12 kJ mol(-1) and dimerization energy of similar to-38 kJ mol(-1) is comparable to the binding energies of a conventional hydrogen-bonded dimer. This study opens up a new strategy to investigate weak intermolecular interactions such as n -> pi* interaction and carbon bonds in the solution phase.
引用
收藏
页码:14327 / 14335
页数:9
相关论文
共 50 条
  • [1] GENERAL ANALYSIS OF NONCOVALENT INTERMOLECULAR INTERACTIONS
    KOLLMAN, P
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1977, 99 (15) : 4875 - 4894
  • [2] The Origins of the Directionality of Noncovalent Intermolecular Interactions
    Wang, Changwei
    Guan, Liangyu
    Danovich, David
    Shaik, Sason
    Mo, Yirong
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2016, 37 (01) : 34 - 45
  • [3] NONCOVALENT INTERACTIONS IN SOLUTION
    NEMETHY, G
    ANNALS OF THE NEW YORK ACADEMY OF SCIENCES, 1969, 155 (A2) : 492 - &
  • [4] Noncovalent Interactions in Solution Halogen Bridges in the Organocatalysis
    Huber, Stefan M.
    CHEMIE IN UNSERER ZEIT, 2017, 51 (01) : 37 - 39
  • [5] Noncovalent sulfur interactions in drug design: Conformational control and intermolecular association
    Bartberger, Michael
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2017, 254
  • [6] Tuning On-Surface Synthesis of Graphene Nanoribbons by Noncovalent Intermolecular Interactions
    Liu, Meizhuang
    Chen, Shenwei
    Li, Tao
    Wang, Jiaobing
    Zhong, Dingyong
    JOURNAL OF PHYSICAL CHEMISTRY C, 2018, 122 (42): : 24415 - 24420
  • [7] Synergistic Intra- and Intermolecular Noncovalent Interactions for Ultralong Organic Phosphorescence
    Li, Xiao-Ning
    Yang, Mingxue
    Chen, Xu-Lin
    Jia, Ji-Hui
    Zhao, Wan-Wan
    Wu, Xiao-Yuan
    Wang, Sa-Sa
    Meng, Lingyi
    Lu, Can-Zhong
    SMALL, 2019, 15 (45)
  • [8] Assessment of Weak Intermolecular Interactions Across QM/MM Noncovalent Boundaries
    Kumbhar, Sadhana
    Fischer, Frank D.
    Waller, Mark P.
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2012, 52 (01) : 93 - 98
  • [9] Predicting the Sites and Energies of Noncovalent Intermolecular Interactions Using Local Properties
    El Kerdawy, Ahmed
    Wick, Christian R.
    Hennemann, Matthias
    Clark, Timothy
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2012, 52 (04) : 1061 - 1071
  • [10] MACROMOLECULAR SOLUTION STRUCTURE AND INTERMOLECULAR INTERACTIONS
    WASHINGTON, GE
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1988, 196 : 83 - COLL