A colorimetric method for H1N1 DNA detection using rolling circle amplification

被引:41
作者
Xing, Yasi [1 ,2 ]
Wang, Ping [1 ]
Zang, Yucui [1 ,3 ]
Ge, Yuqing [1 ]
Jin, Qinghui [1 ]
Zhao, Jianlong [1 ]
Xu, Xia [2 ]
Zhao, Guoqiang [3 ]
Mao, Hongju [1 ]
机构
[1] Chinese Acad Sci, Shanghai Inst Microsyst & Informat Technol, State Key Lab Transducer Technol, Shanghai 200050, Peoples R China
[2] Zhengzhou Univ, Coll Pharm, Zhengzhou 450001, Peoples R China
[3] Zhengzhou Univ, Dept Basic Med Coll, Zhengzhou 450052, Peoples R China
关键词
POLYMERASE-CHAIN-REACTION; GOLD NANOPARTICLE PROBES; NUCLEIC-ACIDS; GENOMIC DNA; IDENTIFICATION; SEQUENCES; VIRUS;
D O I
10.1039/c3an00100h
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
A highly sensitive and specific colorimetry-based rolling circle amplification (RCA) assay has been successfully developed as a method for the effective detection of H1N1 DNA. Specific oligonucleotide and reporter primer probes were designed together with a circular template, and the oligonucleotide probes were attached to the surfaces of magnetic beads (MBs) to form functional MB-DNA conjugates as capture probes for the target H1N1 DNA molecules. Together with the addition of DNA targets and reporter primer probes to the MB-DNA conjugates, sandwiched hybrids were formed. The initiation of RCA amplification using the circular template in the presence of phi29 polymerase allowed for the amplification of a large number of repeat sequences of the single-stranded (ss)-DNA product. This RCA product accumulated gold nanoparticles (AuNPs), resulting in a colorimetric change that could be viewed by the naked eye or detected using UV-vis spectroscopy. According to this method, H1N1 DNA could be detected at the 1 pmol L-1 level. This platform exhibited design convenience, simplicity, and cost-effectiveness, and could be used to provide a new diagnostic assay for H1N1, and other infectious diseases.
引用
收藏
页码:3457 / 3462
页数:6
相关论文
共 25 条
[1]   SNP identification in unamplified human genomic DNA with gold nanoparticle probes [J].
Bao, YP ;
Huber, M ;
Wei, TF ;
Marla, SS ;
Storhoff, JJ ;
Muller, UR .
NUCLEIC ACIDS RESEARCH, 2005, 33 (02) :e15
[2]   ONE POT SOLUTION SYNTHESIS OF CYCLIC OLIGODEOXYRIBONUCLEOTIDES [J].
CAPOBIANCO, ML ;
CARCURO, A ;
TONDELLI, L ;
GARBESI, A ;
BONORA, GM .
NUCLEIC ACIDS RESEARCH, 1990, 18 (09) :2661-2669
[3]  
Demidov Vadim V, 2002, Expert Rev Mol Diagn, V2, P542, DOI 10.1586/14737159.2.6.542
[4]   CONTROLLED NUCLEATION FOR REGULATION OF PARTICLE-SIZE IN MONODISPERSE GOLD SUSPENSIONS [J].
FRENS, G .
NATURE-PHYSICAL SCIENCE, 1973, 241 (105) :20-22
[5]   Validation of a polymerase chain reaction-oligochromatovaphy test for detection of influenza A (H1N1) 2009 virus [J].
Fuenzalida, Loreto ;
Prat, Cristina ;
Blanco, Silvia ;
Bas, Albert ;
Dominguez, M. J. ;
Hernandez, M. Angeles ;
Rodrigo, Carlos ;
Ausina, Vicente .
DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE, 2012, 72 (02) :144-149
[6]   Surface-Enhanced Raman Scattering Based Ligase Detection Reaction [J].
Huh, Yuri Suk ;
Lowe, Adam J. ;
Strickland, Aaron D. ;
Batt, Carl A. ;
Erickson, David .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2009, 131 (06) :2208-2213
[7]   Digital quantification using amplified single-molecule detection [J].
Jarvius, Jonas ;
Melin, Jonas ;
Goransson, Jenny ;
Stenberg, Johan ;
Fredriksson, Simon ;
Gonzalez-Rey, Carlos ;
Bertilsson, Stefan ;
Nilsson, Mats .
NATURE METHODS, 2006, 3 (09) :725-727
[8]   Split DNA enzyme for visual single nucleotide polymorphism typing [J].
Kolpashchikov, Dmitry M. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (10) :2934-2935
[9]   Colorimetric detection of DNA sequences based on electrostatic interactions with unmodified gold nanoparticles [J].
Li, HX ;
Rothberg, L .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (39) :14036-14039
[10]   Label-free colorimetric detection of specific sequences in genomic DNA amplified by the polymerase chain reaction [J].
Li, HX ;
Rothberg, LJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (35) :10958-10961