Optimal fits of diffusion constants from single-time data points of Brownian trajectories

被引:14
作者
Boyer, Denis [1 ]
Dean, David S. [2 ,3 ]
Mejia-Monasterio, Carlos [4 ,5 ]
Oshanin, Gleb [6 ]
机构
[1] Univ Nacl Autonoma Mexico, Inst Fis, Mexico City 04510, DF, Mexico
[2] Univ Bordeaux, F-33400 Talence, France
[3] CNRS, LOMA, UMR 5798, F-33400 Talence, France
[4] Tech Univ Madrid, Lab Phys Properties, Madrid 28040, Spain
[5] Univ Helsinki, Dept Math & Stat, FIN-00014 Helsinki, Finland
[6] Univ Paris 06, CNRS, Lab Phys Theorique Matiere Condensee, UMR 7600, F-75252 Paris 5, France
来源
PHYSICAL REVIEW E | 2012年 / 86卷 / 06期
基金
芬兰科学院; 欧洲研究理事会;
关键词
PARTICLE TRACKING; MEMBRANE;
D O I
10.1103/PhysRevE.86.060101
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Experimental methods based on single particle tracking (SPT) are being increasingly employed in the physical and biological sciences, where nanoscale objects are visualized with high temporal and spatial resolution. SPT can probe interactions between a particle and its environment but the price to be paid is the absence of ensemble averaging and a consequent lack of statistics. Here we address the benchmark question of how to accurately extract the diffusion constant of one single Brownian trajectory. We analyze a class of estimators based on weighted functionals of the square displacement. For a certain choice of the weight function these functionals provide the true ensemble averaged diffusion coefficient, with a precision that increases with the trajectory resolution. DOI: 10.1103/PhysRevE.86.060101
引用
收藏
页数:5
相关论文
共 25 条
[11]   Random time-scale invariant diffusion and transport coefficients [J].
He, Y. ;
Burov, S. ;
Metzler, R. ;
Barkai, E. .
PHYSICAL REVIEW LETTERS, 2008, 101 (05)
[12]   In Vivo Anomalous Diffusion and Weak Ergodicity Breaking of Lipid Granules [J].
Jeon, Jae-Hyung ;
Tejedor, Vincent ;
Burov, Stas ;
Barkai, Eli ;
Selhuber-Unkel, Christine ;
Berg-Sorensen, Kirstine ;
Oddershede, Lene ;
Metzler, Ralf .
PHYSICAL REVIEW LETTERS, 2011, 106 (04)
[13]   Nonergodicity mimics inhomogeneity in single particle tracking [J].
Lubelski, Ariel ;
Sokolov, Igor M. ;
Klafter, Joseph .
PHYSICAL REVIEW LETTERS, 2008, 100 (25)
[14]   OPTICAL MEASUREMENTS OF FREQUENCY-DEPENDENT LINEAR VISCOELASTIC MODULI OF COMPLEX FLUIDS [J].
MASON, TG ;
WEITZ, DA .
PHYSICAL REVIEW LETTERS, 1995, 74 (07) :1250-1253
[15]   First passages for a search by a swarm of independent random searchers [J].
Mejia-Monasterio, Carlos ;
Oshanin, Gleb ;
Schehr, Gregory .
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2011,
[16]   Optimal diffusion coefficient estimation in single-particle tracking [J].
Michalet, Xavier ;
Berglund, Andrew J. .
PHYSICAL REVIEW E, 2012, 85 (06)
[17]   Mean square displacement analysis of single-particle trajectories with localization error: Brownian motion in an isotropic medium [J].
Michalet, Xavier .
PHYSICAL REVIEW E, 2010, 82 (04)
[18]   New directions in single-molecule imaging and analysis [J].
Moerner, W. E. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (31) :12596-12602
[19]   Distribution of time-averaged observables for weak ergodicity breaking [J].
Rebenshtok, A. ;
Barkai, E. .
PHYSICAL REVIEW LETTERS, 2007, 99 (21)
[20]   Single-particle tracking: Applications to membrane dynamics [J].
Saxton, MJ ;
Jacobson, K .
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 1997, 26 :373-399