Optimal fits of diffusion constants from single-time data points of Brownian trajectories

被引:14
|
作者
Boyer, Denis [1 ]
Dean, David S. [2 ,3 ]
Mejia-Monasterio, Carlos [4 ,5 ]
Oshanin, Gleb [6 ]
机构
[1] Univ Nacl Autonoma Mexico, Inst Fis, Mexico City 04510, DF, Mexico
[2] Univ Bordeaux, F-33400 Talence, France
[3] CNRS, LOMA, UMR 5798, F-33400 Talence, France
[4] Tech Univ Madrid, Lab Phys Properties, Madrid 28040, Spain
[5] Univ Helsinki, Dept Math & Stat, FIN-00014 Helsinki, Finland
[6] Univ Paris 06, CNRS, Lab Phys Theorique Matiere Condensee, UMR 7600, F-75252 Paris 5, France
来源
PHYSICAL REVIEW E | 2012年 / 86卷 / 06期
基金
芬兰科学院; 欧洲研究理事会;
关键词
PARTICLE TRACKING; MEMBRANE;
D O I
10.1103/PhysRevE.86.060101
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Experimental methods based on single particle tracking (SPT) are being increasingly employed in the physical and biological sciences, where nanoscale objects are visualized with high temporal and spatial resolution. SPT can probe interactions between a particle and its environment but the price to be paid is the absence of ensemble averaging and a consequent lack of statistics. Here we address the benchmark question of how to accurately extract the diffusion constant of one single Brownian trajectory. We analyze a class of estimators based on weighted functionals of the square displacement. For a certain choice of the weight function these functionals provide the true ensemble averaged diffusion coefficient, with a precision that increases with the trajectory resolution. DOI: 10.1103/PhysRevE.86.060101
引用
收藏
页数:5
相关论文
共 5 条
  • [1] Optimal least-squares estimators of the diffusion constant from a single Brownian trajectory
    Boyer, Denis
    Dean, David S.
    Mejia-Monasterio, Carlos
    Oshanin, Gleb
    EUROPEAN PHYSICAL JOURNAL-SPECIAL TOPICS, 2013, 216 (01) : 57 - 71
  • [2] Optimal estimates of the diffusion coefficient of a single Brownian trajectory
    Boyer, Denis
    Dean, David S.
    Mejia-Monasterio, Carlos
    Oshanin, Gleb
    PHYSICAL REVIEW E, 2012, 85 (03):
  • [3] Estimation of diffusion constants from single molecular measurement without explicit tracking
    Teraguchi, Shunsuke
    Kumagai, Yutaro
    BMC SYSTEMS BIOLOGY, 2018, 12
  • [4] Improved Analysis for Determining Diffusion Coefficients from Short, Single-Molecule Trajectories with Photoblinking
    Shuang, Bo
    Byers, Chad P.
    Kisley, Lydia
    Wang, Lin-Yung
    Zhao, Julia
    Morimura, Hiroyuki
    Link, Stephan
    Landes, Christy F.
    LANGMUIR, 2013, 29 (01) : 228 - 234
  • [5] Connecting the dots across time: reconstruction of single-cell signalling trajectories using time-stamped data
    Mukherjee, Sayak
    Stewart, David
    Stewart, William
    Lanier, Lewis L.
    Das, Jayajit
    ROYAL SOCIETY OPEN SCIENCE, 2017, 4 (08):