Polymorphisms within the COL5A1 3-UTR That Alters mRNA Structure and the MIR608 Gene are Associated with Achilles Tendinopathy

被引:62
作者
Abrahams, Yoonus [1 ,2 ]
Laguette, Mary-Jessica [1 ,2 ]
Prince, Sharon [2 ]
Collins, Malcolm [1 ,3 ]
机构
[1] UCT MRC Res Unit Exercise Sci & Sports Med, Newlands, South Africa
[2] Univ Cape Town, Dept Human Biol, ZA-7925 Cape Town, South Africa
[3] South African Med Res Council, Cape Town, South Africa
基金
英国医学研究理事会; 新加坡国家研究基金会;
关键词
Type V collagen; miRNA; tendon; ligament; athletic performance; flexibility; SECONDARY STRUCTURE PREDICTION; SOFT-TISSUE INJURIES; THERMODYNAMIC PARAMETERS; TENDON PATHOLOGY; STABILITY; MECHANISM; VARIANTS; PATHWAY; DISEASE; 3'-UTR;
D O I
10.1111/ahg.12013
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
COL5A1 encodes for the 1 chain of type V collagen, an important regulator of fibril assembly in tendons, ligaments and other connective tissues. A polymorphism (rs12722) within the functional COL5A1 3-untranslated region (UTR) has been shown to associate with chronic Achilles tendinopathy and other exercise-related phenotypes. The COL5A1 3-UTR contains several putative cis-acting elements including a functional Hsa-miR-608 binding site. The aim of this study was to determine whether previously uncharacterized polymorphisms within a functional region of the COL5A1 3-UTR or the MIR608 gene are associated with chronic Achilles tendinopathy. The effect of these COL5A1 3-UTR polymorphisms on the 3-UTR predicted mRNA secondary structure was also investigated. One hundred and sixty Caucasian chronic Achilles tendinopathic and 342 control participants were genotyped for the COL5A1 3-UTR markers rs71746744, rs16399 and rs1134170, as well as marker rs4919510 within MIR608. All four genetic markers were independently associated with chronic Achilles tendinopathy. The COL5A1 polymorphisms appear to alter the predicted secondary structure of the 3-UTR. We propose that the secondary structure plays a role in the regulation of the COL5A1 mRNA stability and by implication type V collagen production.
引用
收藏
页码:204 / 214
页数:11
相关论文
共 37 条
  • [1] Range of motion measurements diverge with increasing age for COL5A1 genotypes
    Brown, J. C.
    Miller, C. -J.
    Schwellnus, M. P.
    Collins, M.
    [J]. SCANDINAVIAN JOURNAL OF MEDICINE & SCIENCE IN SPORTS, 2011, 21 (06) : E266 - E272
  • [2] The COL5A1 Gene, Ultra-Marathon Running Performance, and Range of Motion
    Brown, James C.
    Miller, Caron-Jayne
    Posthumus, Michael
    Schwellnus, Martin P.
    Collins, Malcolm
    [J]. INTERNATIONAL JOURNAL OF SPORTS PHYSIOLOGY AND PERFORMANCE, 2011, 6 (04) : 485 - 496
  • [3] Mechanism and regulation of mRNA polyadenylation
    Colgan, DF
    Manley, JL
    [J]. GENES & DEVELOPMENT, 1997, 11 (21) : 2755 - 2766
  • [4] The COL5A1 genotype is associated with range of motion measurements
    Collins, M.
    Mokone, G. G.
    September, A. V.
    van der Merwe, L.
    Schwellnus, M. P.
    [J]. SCANDINAVIAN JOURNAL OF MEDICINE & SCIENCE IN SPORTS, 2009, 19 (06) : 803 - 810
  • [5] Type V Collagen Genotype and Exercise-Related Phenotype Relationships: A Novel Hypothesis
    Collins, Malcolm
    Posthumus, Michael
    [J]. EXERCISE AND SPORT SCIENCES REVIEWS, 2011, 39 (04): : 191 - 198
  • [6] Collins M, 2009, MED SPORT SCI, V54, P136, DOI 10.1159/000235701
  • [7] RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble
    Ding, Y
    Chan, CY
    Lawrence, CE
    [J]. RNA, 2005, 11 (08) : 1157 - 1166
  • [8] A statistical sampling algorithm for RNA secondary structure prediction
    Ding, Y
    Lawrence, CE
    [J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (24) : 7280 - 7301
  • [9] A potential mechanism for age-related declines in patellar tendon biomechanics
    Dressler, MR
    Butler, DL
    Wenstrup, R
    Awad, HA
    Smith, F
    Boivin, GP
    [J]. JOURNAL OF ORTHOPAEDIC RESEARCH, 2002, 20 (06) : 1315 - 1322
  • [10] Cubic exact solutions for the estimation of pairwise haplotype frequencies:: implications for linkage disequilibrium analyses and a web tool 'CubeX'
    Gaunt, Tom R.
    Rodriguez, Santiago
    Day, Ian N. M.
    [J]. BMC BIOINFORMATICS, 2007, 8 (1)