Study of RNA Secondary Structure Prediction Algorithms

被引：2

作者：

Sun, Ying ^{[1
]}

Ye, Shenghua ^{[2
]}

Lu, Hongwei ^{[1
]}

机构：

[1] Shanghai Univ Sci & Technol, Med Instrument & Food Engn Coll, Shanghai 201800, Peoples R China

[2] Univ Toronto, Div Engn Sci, Toronto, ON, Canada

来源：

BIOTECHNOLOGY, CHEMICAL AND MATERIALS ENGINEERING, PTS 1-3 | 2012年 / 393-395卷

关键词：

RNA secondary structure prediction; Minimum free energy model; Comparative sequence method; Pseudoknot; CONTEXT-FREE GRAMMARS; PSEUDOKNOTS; ALIGNMENT;

D O I：

10.4028/www.scientific.net/AMR.393-395.955

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

RNA secondary structure study is one of the most important fields in computational molecular biology. According to different conditions, RNA secondary structure prediction derives two ways. In the paper, the method to predict RNA secondary structure is introduced in two ways. It includes the mathematic models and main algorithms. The paper also points out the existing problems. The main development directions of RNA secondary structure prediction algorithm is also be indicated.

引用

页码：955 / +

页数：4

共 27 条

[1] A new distance for high level RNA secondary structure comparison [J].

Allali, J ;

Sagot, MF .

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2005, 2 (01) :3-14

[2]

[Anonymous], RNA WORLD

[3]

CAO Su-bing, 2010, J ANHUI AGR SCI, V38, P12933

[4] A Local-stem-search Algorithm to Predict The RNA Secondary Structure [J].

Chen Xiang ;

Bu Dong-Bo ;

Zhang Fa ;

Gao Wen .

PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2009, 36 (01) :115-121

[5]

Durbin R., 1998, Biological sequence analysis: probabilistic models of proteins and nucleic acids

[6] NMR spectroscopy of RNA [J].

Fürtig, B ;

Richter, C ;

Wöhnert, J ;

Schwalbe, H .

CHEMBIOCHEM, 2003, 4 (10) :936-962

[7]

Hochsmann M, 2003, P IEEE BIOINF C

[8] Alignment of RNA base pairing probability matrices [J].

Hofacker, IL ;

Bernhart, SHF ;

Stadler, PF .

BIOINFORMATICS, 2004, 20 (14) :2222-2227

[9] A heuristic approach for detecting RNA H-type pseudoknots [J].

Huang, CH ;

Lu, CL ;

Chiu, HT .

BIOINFORMATICS, 2005, 21 (17) :3501-3508

[10] High sensitivity RNA pseudoknot prediction [J].

Huang, Xiaolu ;

Ali, Hesham .

NUCLEIC ACIDS RESEARCH, 2007, 35 (02) :656-663

← 1 2 3 →