Evaluating the transferability of coarse-grained, density-dependent implicit solvent models to mixtures and chains

被引:51
作者
Allen, Erik C. [1 ]
Rutledge, Gregory C. [1 ]
机构
[1] MIT, Dept Chem Engn, Cambridge, MA 02139 USA
关键词
chemical potential; liquid mixtures; liquid theory; mixing; Monte Carlo methods; AUTOMATIC SIMPLEX OPTIMIZATION; EFFECTIVE PAIR POTENTIALS; MULTIRESOLUTION ANALYSIS; STATISTICAL-MECHANICS; MOLECULAR-DYNAMICS; SIMULATIONS; PARAMETERIZATION;
D O I
10.1063/1.3055594
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Previously, we described a coarse-graining method for creating local density-dependent implicit solvent (DDIS) potentials that reproduce the radial distribution function (RDF) and solute excess chemical potential across a range of particle concentrations [E. C. Allen and G. C. Rutledge, J. Chem. Phys. 128, 154115 (2008)]. In this work, we test the transferability of these potentials, derived from simulations of monomeric solute in monomeric solvent, to mixtures of solutes and to solute chains in the same monomeric solvent. For this purpose, "transferability" refers to the predictive capability of the potentials without additional optimization. We find that RDF transferability to mixtures is very good, while RDF errors in systems of chains increase linearly with chain length. Excess chemical potential transferability is good for mixtures at low solute concentration, chains, and chains of mixed composition; at higher solute concentrations in mixtures, chemical potential transferability fails due to the nature of the DDIS potentials, in which particle insertion directly affects the interaction potential. With these results, we demonstrate that DDIS potentials derived for pure solutes can be used effectively in the study of many important systems including those involving mixtures, chains, and chains of mixed composition in monomeric solvent.
引用
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页数:10
相关论文
共 49 条
[1]   A novel algorithm for creating coarse-grained, density dependent implicit solvent models [J].
Allen, Erik C. ;
Rutledge, Gregory C. .
JOURNAL OF CHEMICAL PHYSICS, 2008, 128 (15)
[2]   Systematic coarse graining of biomolecular and softw-matter systems [J].
Ayton, Gary S. ;
Noid, Will G. ;
Voth, Gregory A. .
MRS BULLETIN, 2007, 32 (11) :929-934
[3]   A coarse-grained molecular model for glycosaminoglycans: Application to chondroitin, chondroitin sulfate, and hyaluronic acid [J].
Bathe, M ;
Rutledge, GC ;
Grodzinsky, AJ ;
Tidor, B .
BIOPHYSICAL JOURNAL, 2005, 88 (06) :3870-3887
[4]  
Bathe M, 2003, J COMPUT CHEM, V24, P876, DOI [10.1002/jcc.10246, 10.1002/jcc.101246]
[5]   EFFICIENT ESTIMATION OF FREE-ENERGY DIFFERENCES FROM MONTE-CARLO DATA [J].
BENNETT, CH .
JOURNAL OF COMPUTATIONAL PHYSICS, 1976, 22 (02) :245-268
[6]   Accurate effective pair potentials for polymer solutions [J].
Bolhuis, PG ;
Louis, AA ;
Hansen, JP ;
Meijer, EJ .
JOURNAL OF CHEMICAL PHYSICS, 2001, 114 (09) :4296-4311
[7]  
*EPAPS, EJCPSA6130033902 EPA
[8]  
Faller R, 1999, J COMPUT CHEM, V20, P1009, DOI 10.1002/(SICI)1096-987X(19990730)20:10<1009::AID-JCC3>3.0.CO
[9]  
2-C
[10]   UNIQUENESS THEOREM FOR FLUID PAIR CORRELATION-FUNCTIONS [J].
HENDERSON, RL .
PHYSICS LETTERS A, 1974, A 49 (03) :197-198