Sequence-Specific and Visual Identification of the Influenza Virus NS Gene by Azobenzene-Tethered Bis-Peptide Nucleic Acid

被引:7
作者
Kaihatsu, Kunihiro [1 ]
Sawada, Shinjiro [1 ]
Nakamura, Shota [2 ]
Nakaya, Takaaki [3 ]
Yasunaga, Teruo [2 ]
Kato, Nobuo [1 ]
机构
[1] Osaka Univ, Inst Sci & Ind Res, Osaka, Japan
[2] Osaka Univ, Microbial Dis Res Inst, Osaka, Japan
[3] Kyoto Prefectural Univ Med, Dept Infect Dis, Kyoto, Japan
关键词
DUPLEX DNA; PNA; TRANSCRIPTION; RECOGNITION; INHIBITION; BINDING;
D O I
10.1371/journal.pone.0064017
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
To rapidly and specifically identify highly virulent influenza virus strains, we prepared an azobenzene-tethered hairpin-type peptide nucleic acid, bisPNA-AZO, which has a complementary sequence against a highly conserved genomic RNA sequence within the ribonucleoprotein complex of the 2009 pandemic influenza A virus, H1N1 subtype. bisPNA-AZO recognizes the conserved virus genome sequence in a sequence-specific manner. Immobilization of bisPNA-AZO on a plate allowed capture of the target virus gene and the generation of a visual colour signal.
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页数:5
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共 16 条
[1]   Real-time RT-PCR assays for type and subtype detection of influenza A and B viruses [J].
Daum, Luke T. ;
Canas, Linda C. ;
Arulanandam, Bernard P. ;
Niemeyer, Debra ;
Valdes, James J. ;
Chambers, James P. .
INFLUENZA AND OTHER RESPIRATORY VIRUSES, 2007, 1 (04) :167-175
[2]   STABILITY OF PEPTIDE NUCLEIC-ACIDS IN HUMAN SERUM AND CELLULAR-EXTRACTS [J].
DEMIDOV, VV ;
POTAMAN, VN ;
FRANKKAMENETSKII, MD ;
EGHOLM, M ;
BUCHARD, O ;
SONNICHSEN, SH ;
NIELSEN, PE .
BIOCHEMICAL PHARMACOLOGY, 1994, 48 (06) :1310-1313
[3]   PNA HYBRIDIZES TO COMPLEMENTARY OLIGONUCLEOTIDES OBEYING THE WATSON-CRICK HYDROGEN-BONDING RULES [J].
EGHOLM, M ;
BUCHARDT, O ;
CHRISTENSEN, L ;
BEHRENS, C ;
FREIER, SM ;
DRIVER, DA ;
BERG, RH ;
KIM, SK ;
NORDEN, B ;
NIELSEN, PE .
NATURE, 1993, 365 (6446) :566-568
[4]   Detection of influenza A viruses from different species by PCR amplification of conserved sequences in the matrix gene [J].
Fouchier, RAM ;
Bestebroer, TM ;
Herfst, S ;
Van der Kemp, L ;
Rimmelzwaan, GF ;
Osterhaus, ADME .
JOURNAL OF CLINICAL MICROBIOLOGY, 2000, 38 (11) :4096-4101
[5]   Specific and nonspecific inhibition of transcription by DNA, PNA, and phosphorothioate promoter analog duplexes [J].
Hamilton, SE ;
Iyer, M ;
Norton, JC ;
Corey, DR .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 1996, 6 (23) :2897-2900
[6]   Extending recognition by peptide nucleic acids (PNAs): Binding to duplex DNA and inhibition of transcription by tail-clamp PNA-Peptide conjugates [J].
Kaihatsu, K ;
Shah, RH ;
Zhao, X ;
Corey, DR .
BIOCHEMISTRY, 2003, 42 (47) :13996-14003
[7]   MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform [J].
Katoh, K ;
Misawa, K ;
Kuma, K ;
Miyata, T .
NUCLEIC ACIDS RESEARCH, 2002, 30 (14) :3059-3066
[8]   NUCLEAR IMPORT OF MICROINJECTED INFLUENZA-VIRUS RIBONUCLEOPROTEINS [J].
KEMLER, I ;
WHITTAKER, G ;
HELENIUS, A .
VIROLOGY, 1994, 202 (02) :1028-1033
[9]   An experimental study of mechanism and specificity of peptide nucleic acid (PNA) binding to duplex DNA [J].
Kuhn, H ;
Demidov, VV ;
Nielsen, PE ;
Frank-Kamenetskii, MD .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 286 (05) :1337-1345
[10]   Fluorescence Imaging of Influenza H1N1 mRNA in Living Infected Cells Using Single-Chromophore FIT-PNA [J].
Kummer, Susann ;
Knoll, Andrea ;
Socher, Elke ;
Bethge, Lucas ;
Herrmann, Andreas ;
Seitz, Oliver .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2011, 50 (08) :1931-1934