Comparison of gene expression response to neutron and x-ray irradiation using mouse blood

被引:46
作者
Broustas, Constantinos G. [1 ]
Xu, Yanping [2 ]
Harken, Andrew D. [2 ]
Garty, Guy [2 ]
Amundson, Sally A. [1 ]
机构
[1] Columbia Univ, Ctr Radiol Res, Med Ctr, 630 West 168th St, New York, NY 10032 USA
[2] Columbia Univ, Radiol Res Accelerator Facil, Irvington, NY 10533 USA
来源
BMC GENOMICS | 2017年 / 18卷
关键词
Gene expression; Microarrays; Neutron; x-ray; Radiation biodosimetry; UBIQUITIN-CONJUGATING ENZYME; BREAST-CANCER CELLS; A-TYPE CYCLINS; ALPHA-PARTICLE; IONIZING-RADIATION; GENOMIC STABILITY; MESSENGER-RNA; E2F TARGET; DAMAGE; IDENTIFICATION;
D O I
10.1186/s12864-016-3436-1
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Background: In the event of an improvised nuclear device detonation, the prompt radiation exposure would consist of photons plus a neutron component that would contribute to the total dose. As neutrons cause more complex and difficult to repair damage to cells that would result in a more severe health burden to affected individuals, it is paramount to be able to estimate the contribution of neutrons to an estimated dose, to provide information for those making treatment decisions. Results: Mice exposed to either 0.25 or 1 Gy of neutron or 1 or 4 Gy x-ray radiation were sacrificed at 1 or 7 days after exposure. Whole genome microarray analysis identified 7285 and 5045 differentially expressed genes in the blood of mice exposed to neutron or x-ray radiation, respectively. Neutron exposure resulted in mostly downregulated genes, whereas x-rays showed both down-and up-regulated genes. A total of 34 differentially expressed genes were regulated in response to all >= 1 Gy exposures at both times. Of these, 25 genes were consistently downregulated at days 1 and 7, whereas 9 genes, including the transcription factor E2f2, showed bi-directional regulation; being downregulated at day 1, while upregulated at day 7. Gene ontology analysis revealed that genes involved in nucleic acid metabolism processes were persistently downregulated in neutron irradiated mice, whereas genes involved in lipid metabolism were upregulated in x-ray irradiated animals. Most biological processes significantly enriched at both timepoints were consistently represented by either under-or over-expressed genes. In contrast, cell cycle processes were significant among down-regulated genes at day 1, but among up-regulated genes at day 7 after exposure to either neutron or x-rays. Cell cycle genes downregulated at day 1 were mostly distinct from the cell cycle genes upregulated at day 7. However, five cell cycle genes, Fzr1, Ube2c, Ccna2, Nusap1, and Cdc25b, were both downregulated at day 1 and upregulated at day 7. Conclusions: We describe, for the first time, the gene expression profile of mouse blood cells following exposure to neutrons. We have found that neutron radiation results in both distinct and common gene expression patterns compared with x-ray radiation.
引用
收藏
页数:13
相关论文
共 65 条
[1]   Cdh1/Hct1-APC is essential for the survival of postmitotic neurons [J].
Almeida, A ;
Bolaños, JP ;
Moreno, S .
JOURNAL OF NEUROSCIENCE, 2005, 25 (36) :8115-8121
[2]   E2 Ubiquitin-conjugating Enzyme, UBE2C Gene, Is Reciprocally Regulated by Wild-type and Gain-of-Function Mutant p53 [J].
Bajaj, Swati ;
Alam, Sk. Kayum ;
Roy, Kumar Singha ;
Datta, Arindam ;
Nath, Somsubhra ;
Roychoudhury, Susanta .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2016, 291 (27) :14231-14247
[3]   The Cdc14B-Cdh1-Plk1 axis controls the G2 DNA-damage-response checkpoint [J].
Bassermann, Florian ;
Frescas, David ;
Guardavaccaro, Daniele ;
Busino, Luca ;
Peschiaroli, Angelo ;
Pagano, Michele .
CELL, 2008, 134 (02) :256-267
[4]   A phospho-proteomic screen identifies substrates of the checkpoint kinase Chk1 [J].
Blasius, Melanie ;
Forment, Josep V. ;
Thakkar, Neha ;
Wagner, Sebastian A. ;
Choudhary, Chunaram ;
Jackson, Stephen P. .
GENOME BIOLOGY, 2011, 12 (08)
[5]   Dominant negative Ubiquitin-conjugating enzyme E2C sensitizes cervical cancer cells to radiation [J].
Bose, Mayil Vahanan ;
Gopisetty, Gopal ;
Selvaluxmy, Ganesharaja ;
Rajkumar, Thangarajan .
INTERNATIONAL JOURNAL OF RADIATION BIOLOGY, 2012, 88 (09) :629-634
[6]   RB/PLK1-dependent induced pathway by SLAMF3 expression inhibits mitosis and control hepatocarcinoma cell proliferation [J].
Bouhlal, Hicham ;
Ouled-Haddou, Hakim ;
Debuysscher, Veronique ;
Singh, Amrathlal Rabbind ;
Ossart, Christele ;
Reignier, Aline ;
Hocini, Hakim ;
Fouquet, Gregory ;
Al Baghami, Mohammed ;
Eugenio, Melanie Simoes ;
Nguyen-Khac, Eric ;
Regimbeau, Jean-Marc ;
Marcq, Ingrid .
ONCOTARGET, 2016, 7 (09) :9832-9843
[7]   E2F target genes: unraveling the biology [J].
Bracken, AP ;
Ciro, M ;
Cocito, A ;
Helin, K .
TRENDS IN BIOCHEMICAL SCIENCES, 2004, 29 (08) :409-417
[8]   In the right place at the right time: visualizing and understanding mRNA localization [J].
Buxbaum, Adina R. ;
Haimovich, Gal ;
Singer, Robert H. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2015, 16 (02) :95-109
[9]   E2F1 and E2F2 induction in response to DNA damage preserves genomic stability in neuronal cells [J].
Castillo, Daniela S. ;
Campalans, Anna ;
Belluscio, Laura M. ;
Carcagno, Abel L. ;
Radicella, J. Pablo ;
Canepa, Eduardo T. ;
Pregi, Nicolas .
CELL CYCLE, 2015, 14 (08) :1300-1314
[10]   The TRAF-interacting protein (TRAIP) is a novel E2F target with peak expression in mitosis [J].
Chapard, Christophe ;
Hohl, Daniel ;
Huber, Marcel .
ONCOTARGET, 2015, 6 (25) :20933-20945