Phylogenetic relationships in subtribe Poinae (Poaceae, Poeae) based on nuclear ITS and plastid trnT-trnL-trnF sequences

被引:67
作者
Gillespie, Lynn J. [1 ]
Soreng, Robert J. [2 ]
Bull, Roger D. [1 ]
Jacobs, Surrey W. L. [3 ]
Refulio-Rodriguez, Nancy F. [4 ]
机构
[1] Canadian Museum Nat, Ottawa, ON K1P 6P4, Canada
[2] Smithsonian Inst, Natl Museum Nat Hist, Dept Biol, Washington, DC 20560 USA
[3] Royal Bot Gardens, Natl Herbarium, Sydney, NSW 2000, Australia
[4] Rancho Santa Ana Bot Garden, Claremont, CA 91711 USA
关键词
DNA; hybridization; phylogeny; poa; poaceae; poeae;
D O I
10.1139/B08-076
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
The worldwide temperate subtribe Poinae comprises the largest grass genus. Poo (500+ species), and Multiple additional small genera. We explore generic boundaries and relationships among genera of Poinae using nuclear ribosomal internal transcribed spacer data (ITS) and plastid trnT-trnL-trnF (TLF) sequence data. ITS and TLF analyses are mostly congruent with regards to circumscription of genera, and with respect to relationships among Poinae genera. but tree structure is generally better supported among genera in the ITS strict consensus tree. ITS and TLF both Support two main Poinae lineages: (i) Poo and (ii) a clade comprising all other sampled Poinae. Nine small genera were nested within the large Poo clade, including Aphanelytrum. Dissanthelium, and Tovarochloa. supporting inclusion of these as sections within Poo. In the second clade, three subclades support close relationships among Nicoraepoa, Hookerochloa. and Arctagrostis; Arctophila and Dupontia: and Apera, Bellardiochloa. and Ventenata. Genera of the related subtribes Alopecurinae, Cinninae. and Miliinae were mixed among or in Part external to Poinae in different ways in ITS and TLF analyses. and only subtribe Puccinelliinae was strongly supported and monophyletic. ITS analyses Supported placement of Catabrosella, Hyalopoa, and Paracolpodium in Puccinelliinae (no TLF data available). The position of Poo subgenus Arctopoa is inconguent between the two analyses: TLF data Support inclusion within Poo and ITS data place it outside of Poo. Similarly. TLF data resolves the genus Aniselytron Outside of Poo. whereas ITS data place it within Poo. Based oil these results and a consideration of morphology, we recognize Arctopoa and Aniselytron its genera, probably of ancient hybrid origins. Nothogenus x Duarctopoa is coined for Arctopoa x Dupontia. with a single nothospecies x Duarctopoa labradorica. A new combination is provided for Poo subg. Sylvestres.
引用
收藏
页码:938 / 967
页数:30
相关论文
共 33 条
[21]   A molecular phylogenetic study of Deschampsia (Poaceae: Aveneae) inferred from nuclear ITS and plastid trnL sequence data:: support for the recognition of Avenella and Vahlodea [J].
Chiapella, Jorge .
TAXON, 2007, 56 (01) :55-64
[22]   Phylogenetic relationships in the tribes Schizopetaleae and Thelypodieae (Brassicaceae) based on nuclear ribosomal ITS region and plastid ndhF DNA sequences [J].
Warwick, Suzanne I. ;
Sauder, Connie A. ;
Mayer, Michael S. ;
Al-Shenbaz, Ihsan A. .
BOTANY, 2009, 87 (10) :961-985
[23]   Phylogenetic relationships of Elymus L. and related genera (Poaceae) based on the nuclear ribosomal internal transcribed spacer sequences [J].
Dizkirici, Ayten ;
Kaya, Zeki ;
Cabi, Evren ;
Dogan, Musa .
TURKISH JOURNAL OF BOTANY, 2010, 34 (06) :467-478
[24]   Phylogenetic Analyses of Clematis (Ranunculaceae) based on Sequences of Nuclear Ribosomal ITS and Three Plastid Regions [J].
Xie, Lei ;
Wen, Jun ;
Li, Liang-Qian .
SYSTEMATIC BOTANY, 2011, 36 (04) :907-921
[25]   Phylogenetics of Papaver and related genera based on DNA sequences from ITS nuclear ribosomal DNA and plastid trnL intron and trnL-F intergenic spacers [J].
Carolan, James C. ;
Hook, Ingrid L. I. ;
Chase, Mark W. ;
Kadereit, Joachim W. ;
Hodkinson, Trevor R. .
ANNALS OF BOTANY, 2006, 98 (01) :141-155
[26]   A multi-locus analysis of phylogenetic relationships within grass subfamily Pooideae (Poaceae) inferred from sequences of nuclear single copy gene regions compared with plastid DNA [J].
Hochbach, Anne ;
Schneider, Julia ;
Roeser, Martin .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2015, 87 :14-27
[27]   Phylogenetic relationships in the tribe Alysseae (Brassicaceae) based on nuclear ribosomal ITS DNA sequences [J].
Warwick, Suzanne I. ;
Sauder, Connie A. ;
Al-Shehbaz, Ihsan A. .
BOTANY, 2008, 86 (04) :315-336
[28]   Phylogenetic structure of the grass subfamily Pooideae based on comparison of plastid matK gene-3′trnK exon and nuclear ITS sequences [J].
Schneider, Julia ;
Doering, Elke ;
Hilu, Khidir W. ;
Roeser, Martin .
TAXON, 2009, 58 (02) :405-424
[29]   Phylogenetic relationships of species in Pseudoroegneria (Poaceae: Triticeae) and related genera inferred from nuclear rDNA ITS (internal transcribed spacer) sequences [J].
Haiqing Yu ;
Xing Fan ;
Chun Zhang ;
Chunbang Ding ;
Xiaoli Wang ;
Yonghong Zhou .
Biologia, 2008, 63
[30]   Phylogenetic relationships of species in Pseudoroegneria (Poaceae: Triticeae) and related genera inferred from nuclear rDNA ITS (internal transcribed spacer) sequences [J].
Yu, Haiqing ;
Fan, Xing ;
Zhang, Chun ;
Ding, Chunbang ;
Wang, Xiaoli ;
Zhou, Yonghong .
BIOLOGIA, 2008, 63 (04) :498-505