Comprehensive analysis of potential cellular communication networks in advanced osteosarcoma using single-cell RNA sequencing data

被引:7
作者
Xu, Ning [1 ]
Wang, Xiaojing [2 ]
Wang, Lili [1 ]
Song, Yuan [1 ]
Zheng, Xianyou [3 ]
Hu, Hai [1 ,3 ]
机构
[1] Shanghai Eighth Peoples Hosp, Dept Orthoped, Shanghai, Peoples R China
[2] Anhui Med Univ, Affiliated Hosp 1, Dept Neurol, Hefei, Peoples R China
[3] Shanghai Jiao Tong Univ, Peoples Hosp 6, Dept Orthoped, Shanghai, Peoples R China
关键词
osteosarcoma; cell types; cellular communication networks; regulon activity; ScRNA-seq; UP-REGULATION; GRP78; INHIBITION; STEM-CELLS; GROWTH; NOTCH; MIGRATION; FGF; PROLIFERATION; METASTASIS; ACTIVATION;
D O I
10.3389/fgene.2022.1013737
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Osteosarcoma (OS) is a common bone cancer in children and adolescents, and metastasis and recurrence are the major causes of poor treatment outcomes. A better understanding of the tumor microenvironment is required to develop an effective treatment for OS. In this paper, a single-cell RNA sequencing dataset was taken to a systematic genetic analysis, and potential signaling pathways linked with osteosarcoma development were explored. Our findings revealed 25 clusters across 11 osteosarcoma tissues, with 11 cell types including "Chondroblastic cells", "Osteoblastic cells", "Myeloid cells", "Pericytes", "Fibroblasts", "Proliferating osteoblastic cells", "Osteoclasts", "TILs", "Endothelial cells", "Mesenchymal stem cells", and "Myoblasts". The results of Cell communication analysis showed 17 potential cellular communication networks including "COLLAGEN signaling pathway network", "CD99 signaling pathway network", "PTN signaling pathway network", "MIF signaling pathway network", "SPP1 signaling pathway network", "FN1 signaling pathway network", "LAMININ signaling pathway network", "FGF signaling pathway network", "VEGF signaling pathway network", "GALECTIN signaling pathway network", "PERIOSTIN signaling pathway network", "VISFATIN signaling pathway network", "ITGB2 signaling pathway network", "NOTCH signaling pathway network", "IGF signaling pathway network", "VWF signaling pathway network", "PDGF signaling pathway network". This research may provide novel insights into the pathophysiology of OS's molecular processes.
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页数:18
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共 105 条
  • [1] Aibar S, 2017, NAT METHODS, V14, P1083, DOI [10.1038/NMETH.4463, 10.1038/nmeth.4463]
  • [2] The role of the IGF-1 Ec in myoskeletal system and osteosarcoma pathophysiology
    Armakolas, Nikolaos
    Armakolas, Athanasios
    Antonopoulos, Athanasios
    Dimakakos, Andreas
    Stathaki, Martha
    Koutsilieris, Michael
    [J]. CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY, 2016, 108 : 137 - 145
  • [3] Collagen Accumulation in Osteosarcoma Cells lacking GLT25D1 Collagen Galactosyltransferase
    Baumann, Stephan
    Hennet, Thierry
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2016, 291 (35) : 18514 - 18524
  • [4] The FGF family: biology, pathophysiology and therapy
    Beenken, Andrew
    Mohammadi, Moosa
    [J]. NATURE REVIEWS DRUG DISCOVERY, 2009, 8 (03) : 235 - 253
  • [5] BASIC FIBROBLAST GROWTH-FACTOR MEDIATES ITS EFFECTS ON COMMITTED MYELOID PROGENITORS BY DIRECT ACTION AND HAS NO EFFECT ON HEMATOPOIETIC STEM-CELLS
    BERARDI, AC
    WANG, AL
    ABRAHAM, J
    SCADDEN, DT
    [J]. BLOOD, 1995, 86 (06) : 2123 - 2129
  • [6] Higher Expression of SPP1 Predicts Poorer Survival Outcomes in Head and Neck Cancer
    Bie, Tongwu
    Zhang, Xuewen
    [J]. JOURNAL OF IMMUNOLOGY RESEARCH, 2021, 2021
  • [7] Inhibition of Tumor Angiogenesis and Growth by a Small-Molecule Multi-FGF Receptor Blocker with Allosteric Properties
    Bono, Francoise
    De Smet, Frederik
    Herbert, Corentin
    De Bock, Katrien
    Georgiadou, Maria
    Fons, Pierre
    Tjwa, Marc
    Alcouffe, Chantal
    Ny, Annelii
    Bianciotto, Marc
    Jonckx, Bart
    Murakami, Masahiro
    Lanahan, Anthony A.
    Michielsen, Christof
    Sibrac, David
    Dol-Gleizes, Frederique
    Mazzone, Massimiliano
    Zacchigna, Serena
    Herault, Jean-Pascal
    Fischer, Christian
    Rigon, Patrice
    de Almodovar, Carmen Ruiz
    Claes, Filip
    Blanc, Isabelle
    Poesen, Koen
    Zhang, Jie
    Segura, Inmaculada
    Gueguen, Genevieve
    Bordes, Marie-Francoise
    Lambrechts, Diether
    Broussy, Roselyne
    van de Wouwer, Marlies
    Michaux, Corinne
    Shimada, Toru
    Jean, Isabelle
    Blacher, Silvia
    Noel, Agnes
    Motte, Patrick
    Rom, Eran
    Rakic, Jean-Marie
    Katsuma, Susumu
    Schaeffer, Paul
    Yayon, Avner
    Van Schepdael, Ann
    Schwalbe, Harald
    Luigi Gervasio, Francesco
    Carmeliet, Geert
    Rozensky, Jef
    Dewerchin, Mieke
    Simons, Michael
    [J]. CANCER CELL, 2013, 23 (04) : 477 - 488
  • [8] Whole-exome sequencing in osteosarcoma reveals important heterogeneity of genetic alterations
    Bousquet, M.
    Noirot, C.
    Accadbled, F.
    de Gauzy, J. Sales
    Castex, M. P.
    Brousset, P.
    Gomez-Brouchet, A.
    [J]. ANNALS OF ONCOLOGY, 2016, 27 (04) : 738 - 744
  • [9] Notch signalling: a simple pathway becomes complex
    Bray, Sarah J.
    [J]. NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2006, 7 (09) : 678 - 689
  • [10] Genetic insights into the mechanisms of Fgf signaling
    Brewer, J. Richard
    Mazot, Pierre
    Soriano, Philippe
    [J]. GENES & DEVELOPMENT, 2016, 30 (07) : 751 - 771