Using niche centrality within the scope of the nearly neutral theory of evolution to predict genetic diversity in a tropical conifer species-pair

被引:6
作者
Cruz-Nicolas, Jorge [1 ]
Giles-Perez, Gustavo, I [1 ]
Lira-Noriega, Andres [2 ]
Martinez-Mendez, Norberto [3 ]
Aguirre-Planter, Erika [1 ]
Eguiarte, Luis E. [1 ]
Jaramillo-Correa, Juan P. [1 ]
机构
[1] Univ Nacl Autonoma Mexico, Inst Ecol, Dept Ecol Evolut, AP 70-275, Mexico City 70275, DF, Mexico
[2] Red Estudios Mol Avanzados, Inst Ecol AC, Xalapa, Veracruz, Mexico
[3] Inst Politecn Nacl, Dept Zool, Lab Bioconservac & Manejo, Escuela Nacl Ciencias Biol, Mexico City, DF, Mexico
关键词
Abies; effective population size; longitude; niche centroid; purifying selection; SLIGHTLY DELETERIOUS MUTATIONS; GENUS ABIES PINACEAE; ECOLOGICAL NICHE; POPULATION-SIZE; CLIMATIC NICHE; MOLECULAR EVOLUTION; PINUS-PSEUDOSTROBUS; ASSISTED MIGRATION; STATISTICAL-METHOD; LOCAL ADAPTATION;
D O I
10.1111/jbi.13979
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Aim Estimating genetic diversity is key for understanging biogeographic and evolutionary processes. However, gathering genetic information is not feasible for all taxa or populations, particularly in the tropical regions. Identifying proxies for inferring such values has thus become essential. Here, we built on the niche centrality hypothesis (NCH; or central-abundance hypothesis) and the nearly neutral theory of evolution (NNT) to identify some of such proxies using a montane tropical conifer species-pair as model. The NCH predicts more genetic diversity under optimal ecological conditions, which should also allow for more efficient purifying selection, according to the NNT. Location The Transmexican Volcanic Belt, central Mexico. Taxa A fir species-pair endemic to central Mexico,Abies flinckiiandA.religiosa. Methods We estimated patterns of genetic diversity from nuclear SSRs (A,H-E), and gene-coding sequences (pi(S),pi(N)), together with the efficacy of purifying selection, measured as pi(N)/pi(S). After testing for niche overlap, we used several geographic and ecological proxies (i.e. longitude, latitude, elevation, estimated area and distance to the niche centroid in the present and in the LGM) to predict genetic diversity and pi(N)/pi(S)using general linear models. Results Populations at the west of the Trans Mexican Volcanic Belt (TVB) had lower genetic diversity than populations in the east of this mountain chain. Both species had significant niche overlap. The principal predictors for neutral genetic diversity (H-E,Aand pi(S)) were longitude and latitude, followed by the current distance to the niche centroid; the efficiency of purifying selection was mostly accounted for by the current distance to the niche centroid (which was also correlated with elevation). No correlation was observed between genetic diversity or pi(N)/pi(S)and current population area. Main conclusions Historical and ecological factors have to be taken into account for explaining the amounts of genetic diversity in mountain tropical species. Following the NTT, populations closer to the niche centroid are more efficient at eliminating slightly deleterious mutations than marginal stands, independently of their size or geographic location (longitude). Expanding the central-abundance theory within the scope of the NTT might help reconciling conflicting views concerning the extent of its empirical support.
引用
收藏
页码:2755 / 2772
页数:18
相关论文
共 132 条
[1]   Effects of marginality on plant population performance [J].
Abeli, Thomas ;
Gentili, Rodolfo ;
Mondoni, Andrea ;
Orsenigo, Simone ;
Rossi, Graziano .
JOURNAL OF BIOGEOGRAPHY, 2014, 41 (02) :239-249
[2]   Connecting genomic patterns of local adaptation and niche suitability in teosintes [J].
Aguirre-Liguori, J. A. ;
Tenaillon, M. I. ;
Vazquez-Lobo, A. ;
Gaut, B. S. ;
Jaramillo-Correa, J. P. ;
Montes-Hernandez, S. ;
Souza, V. ;
Eguiarte, L. E. .
MOLECULAR ECOLOGY, 2017, 26 (16) :4226-4240
[3]   Low levels of genetic variation within and high levels of genetic differentiation among populations of species of Abies from southern Mexico and Guatemala [J].
Aguirre-Planter, E ;
Furnier, GR ;
Eguiarte, LE .
AMERICAN JOURNAL OF BOTANY, 2000, 87 (03) :362-371
[4]   Phylogeny, diversification rates and species boundaries of Mesoamerican firs (Abies, Pinaceae) in a genus-wide context [J].
Aguirre-Planter, Erika ;
Jaramillo-Correa, Juan P. ;
Gomez-Acevedo, Sandra ;
Khasa, Damase P. ;
Bousquet, Jean ;
Eguiarte, Luis E. .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2012, 62 (01) :263-274
[5]   Population history and natural selection shape patterns of genetic variation in 132 genes [J].
Akey, JM ;
Eberle, MA ;
Rieder, MJ ;
Carlson, CS ;
Shriver, MD ;
Nickerson, DA ;
Kruglyak, L .
PLOS BIOLOGY, 2004, 2 (10) :1591-1599
[6]   On the relationship between habitat suitability and population abundance under different dispersal scenarios [J].
Alfredo Osorio-Olvera, Luis ;
Falconi, Manuel ;
Soberon, Jorge .
REVISTA MEXICANA DE BIODIVERSIDAD, 2016, 87 (03) :1080-1088
[7]   Ectomycorrhizal fungal communities in high mountain conifer forests in central Mexico and their potential use in the assisted migration of Abies religiosa [J].
Arguelles-Moyao, Andres ;
Garibay-Orijel, Roberto .
MYCORRHIZA, 2018, 28 (5-6) :509-521
[8]  
Austerlitz F, 2000, GENETICS, V154, P1309
[9]   The crucial role of the accessible area in ecological niche modeling and species distribution modeling [J].
Barve, Narayani ;
Barve, Vijay ;
Jimenez-Valverde, Alberto ;
Lira-Noriega, Andres ;
Maher, Sean P. ;
Peterson, A. Townsend ;
Soberon, Jorge ;
Villalobos, Fabricio .
ECOLOGICAL MODELLING, 2011, 222 (11) :1810-1819
[10]   North-South Colonization Associated with Local Adaptation of the Wild Tomato Species Solanum chilense [J].
Boendel, Katharina B. ;
Lainer, Hilde ;
Nosenko, Tetyana ;
Mboup, Mamadou ;
Tellier, Aurelien ;
Stephan, Wolfgang .
MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (11) :2932-2943