Opposite translocation of long and short oligomers through a nanopore

被引:5
作者
Getfert, Sebastian [1 ]
Toews, Thomas [1 ]
Reimann, Peter [1 ]
机构
[1] Univ Bielefeld, Fak Phys, D-33615 Bielefeld, Germany
来源
PHYSICAL REVIEW E | 2013年 / 87卷 / 06期
关键词
DNA TRANSLOCATION; TRANSPORT; FIELD;
D O I
10.1103/PhysRevE.87.062710
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
We consider elongated cylindrical particles, modeling, e. g., DNA fragments or nanorods, while they translocate under the action of an externally applied voltage through a solid state nanopore. Particular emphasis is put on the concomitant potential energy landscape encountered by the particle on its passage through the pore due to the complex interplay of various electrohydrodynamic effects beyond the realm of small Debye lengths. We find that the net potential energy difference across the membrane may be of opposite sign for short and long particles of equal diameters and charge densities (e. g., oligomers). Thermal noise thus leads to biased diffusion through the pore in opposite directions. By means of an additional membrane gate electrode it is even possible to control the specific particle length at which this transport inversion occurs.
引用
收藏
页数:6
相关论文
共 27 条
[21]   Macroscale description of electrokinetic flows at large zeta potentials: Nonlinear surface conduction [J].
Schnitzer, Ory ;
Yariv, Ehud .
PHYSICAL REVIEW E, 2012, 86 (02)
[22]   Geometry-induced asymmetric diffusion [J].
Shaw, Robert S. ;
Packard, Norman ;
Schroter, Matthias ;
Swinney, Harry L. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (23) :9580-9584
[23]   ELECTROPHORESIS OF RODS [J].
SHERWOOD, JD .
JOURNAL OF THE CHEMICAL SOCIETY-FARADAY TRANSACTIONS II, 1982, 78 :1091-1100
[24]   Salt dependence of ion transport and DNA translocation through solid-state nanopores [J].
Smeets, RMM ;
Keyser, UF ;
Krapf, D ;
Wu, MY ;
Dekker, NH ;
Dekker, C .
NANO LETTERS, 2006, 6 (01) :89-95
[25]   Origin of the electrophoretic force on DNA in solid-state nanopores [J].
van Dorp, Stijn ;
Keyser, Ulrich F. ;
Dekker, Nynke H. ;
Dekker, Cees ;
Lemay, Serge G. .
NATURE PHYSICS, 2009, 5 (05) :347-351
[26]   Gate effects on DNA translocation through silicon dioxide nanopore [J].
Yen, Pei-chun ;
Wang, Chung-hsuan ;
Hwang, Gwo-Jen ;
Chou, Y. C. .
REVIEW OF SCIENTIFIC INSTRUMENTS, 2012, 83 (03)
[27]   Effective charge and free energy of DNA inside an ion channel [J].
Zhang, Jingshan ;
Shklovskii, B. I. .
PHYSICAL REVIEW E, 2007, 75 (02)