miRNA sponges: soaking up miRNAs for regulation of gene expression

被引:177
作者
Bak, Rasmus O. [1 ]
Mikkelsen, Jacob Giehm [1 ]
机构
[1] Aarhus Univ, Dept Biomed, Aarhus C, Denmark
关键词
MEDIATED TRANSLATIONAL REPRESSION; BINDING PROTEIN HUR; MICRORNA BIOGENESIS; MESSENGER-RNAS; IN-VIVO; INDEPENDENT FUNCTION; MAMMALIAN MICRORNAS; 3' ADENYLATION; NONCODING RNA; CIRCULAR RNAS;
D O I
10.1002/wrna.1213
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
MicroRNAs (miRNAs) are small regulatory RNAs that act in an entangled web of interactions with target mRNAs to shape the cellular protein landscape by post-transcriptional control of mRNA decay and translation. miRNAs are themselves subject to numerous regulatory mechanisms that adjust their prevalence and activity. Emerging evidence suggests that miRNAs are themselves targeted by regulatory RNA species, and the identification of several classes of noncoding RNA molecules carrying miRNA binding sites has added a new intricate dimension to miRNA regulation. Such miRNA sponges' bind miRNAs and competitively sequester them from their natural targets. Endogenous miRNA sponges, also termed competing endogenous RNAs (ceRNAs), act to buffer the activity of miRNAs on physiologically relevant targets. This class of sponges includes endogenously transcribed pseudogenes, long noncoding RNAs, and recently discovered circular RNAs and may act in large complex networks in conjunction with miRNAs to regulate the output of protein. With the growing demand of regulating miRNA activity for experimental purposes and potential future clinical use, naturally occurring miRNA sponges are providing inspiration for engineering of gene vector-encoded sponges as potent inhibitors of miRNA activity. Combined with potent and versatile vector technologies, expression of custom-designed sponges provides new means of managing miRNAs and soaking up miRNAs for therapeutic regulation of gene expression. For further resources related to this article, please visit the . Conflict of interest: The authors have declared no conflicts of interest for this article.
引用
收藏
页码:317 / 333
页数:17
相关论文
共 126 条
  • [1] Lentiviral Hematopoietic Stem Cell Gene Therapy in Patients with Wiskott-Aldrich Syndrome
    Aiuti, Alessandro
    Biasco, Luca
    Scaramuzza, Samantha
    Ferrua, Francesca
    Cicalese, Maria Pia
    Baricordi, Cristina
    Dionisio, Francesca
    Calabria, Andrea
    Giannelli, Stefania
    Castiello, Maria Carmina
    Bosticardo, Marita
    Evangelio, Costanza
    Assanelli, Andrea
    Casiraghi, Miriam
    Di Nunzio, Sara
    Callegaro, Luciano
    Benati, Claudia
    Rizzardi, Paolo
    Pellin, Danilo
    Di Serio, Clelia
    Schmidt, Manfred
    Von Kalle, Christof
    Gardner, Jason
    Mehta, Nalini
    Neduva, Victor
    Dow, David J.
    Galy, Anne
    Miniero, Roberto
    Finocchi, Andrea
    Metin, Ayse
    Banerjee, Pinaki P.
    Orange, Jordan S.
    Galimberti, Stefania
    Valsecchi, Maria Grazia
    Biffi, Alessandra
    Montini, Eugenio
    Villa, Anna
    Ciceri, Fabio
    Roncarolo, Maria Grazia
    Naldini, Luigi
    [J]. SCIENCE, 2013, 341 (6148) : 865 - U71
  • [2] Target RNA-Directed Trimming and Tailing of Small Silencing RNAs
    Ameres, Stefan L.
    Horwich, Michael D.
    Hung, Jui-Hung
    Xu, Jia
    Ghildiyal, Megha
    Weng, Zhiping
    Zamore, Phillip D.
    [J]. SCIENCE, 2010, 328 (5985) : 1534 - 1539
  • [3] Suppression of RNA interference by adenovirus virus-associated RNA
    Andersson, MG
    Haasnoot, PCJ
    Xu, N
    Berenjian, S
    Berkhout, B
    Akusjärvi, G
    [J]. JOURNAL OF VIROLOGY, 2005, 79 (15) : 9556 - 9565
  • [4] Target mRNA abundance dilutes microRNA and siRNA activity
    Arvey, Aaron
    Larsson, Erik
    Sander, Chris
    Leslie, Christina S.
    Marks, Debora S.
    [J]. MOLECULAR SYSTEMS BIOLOGY, 2010, 6
  • [5] Kinetic Analysis Reveals the Fate of a MicroRNA following Target Regulation in Mammalian Cells
    Baccarini, Alessia
    Chauhan, Hemangini
    Gardner, Thomas J.
    Jayaprakash, Anitha D.
    Sachidanandam, Ravi
    Brown, Brian D.
    [J]. CURRENT BIOLOGY, 2011, 21 (05) : 369 - 376
  • [6] Degradation of Host MicroRNAs by Poxvirus Poly(A) Polymerase Reveals Terminal RNA Methylation as a Protective Antiviral Mechanism
    Backes, Simone
    Shapiro, Jillian S.
    Sabin, Leah R.
    Pham, Alissa M.
    Reyes, Ismarc
    Moss, Bernard
    Cherry, Sara
    tenOever, Benjamin R.
    [J]. CELL HOST & MICROBE, 2012, 12 (02) : 200 - 210
  • [7] The impact of microRNAs on protein output
    Baek, Daehyun
    Villen, Judit
    Shin, Chanseok
    Camargo, Fernando D.
    Gygi, Steven P.
    Bartel, David P.
    [J]. NATURE, 2008, 455 (7209) : 64 - U38
  • [8] Potent microRNA suppression by RNA Pol II-transcribed 'Tough Decoy' inhibitors
    Bak, Rasmus O.
    Hollensen, Anne Kruse
    Primo, Maria Nascimento
    Sorensen, Camilla Darum
    Mikkelsen, Jacob Giehm
    [J]. RNA, 2013, 19 (02) : 280 - 293
  • [9] MicroRNAs: Target Recognition and Regulatory Functions
    Bartel, David P.
    [J]. CELL, 2009, 136 (02) : 215 - 233
  • [10] Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
    Baskerville, S
    Bartel, DP
    [J]. RNA, 2005, 11 (03) : 241 - 247