A Single-Molecule Perspective on the Role of Solvent Hydrogen Bonds in Protein Folding and Chemical Reactions

被引:36
作者
Dougan, Lorna [1 ]
Ainavarapu, Koti Rama [2 ]
Genchev, Georgi [3 ]
Lu, Hui [3 ]
Fernandez, Julio M. [1 ]
机构
[1] Columbia Univ, New York, NY 10027 USA
[2] Tata Inst Fundamental Res, Dept Chem Sci, Bombay 40005, Maharashtra, India
[3] Univ Illinois, Dept Bioengn, Chicago, IL 60607 USA
关键词
hydrogen bonds; proteins; single-molecule studies; solvent effects; transition states;
D O I
10.1002/cphc.200800572
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present an array of force spectroscopy experiments that aim to identify the role of solvent hydrogen bonds in protein folding and chemical reactions at the single-molecule level. In our experiments we control the strength of hydrogen bonds in the solvent environment by substituting water (H2O) with deuterium oxide (D2O). Using a combination of force protocols, we demonstrate that protein unfolding, protein collapse, protein folding and a chemical reaction are affected in different ways by substituting H2O with D2O. We find that D2O molecules form an integral part of the unfolding transition structure of the immunoglobulin module of human cardiac titin, 127. Strikingly, we find that D2O is a worse solvent than H2O for the protein 127, in direct contrast with the behaviour of simple hydrocarbons. We measure the effect of substituting H2O with D2O on the force dependent rate of reduction of a disulphide bond engineered within a single protein. Altogether, these experiments provide new information on the nature of the underlying interactions in protein folding and chemical reactions and demonstrate the power of single-molecule techniques to identify the changes induced by a small change in hydrogen bond strength.
引用
收藏
页码:2836 / 2847
页数:12
相关论文
共 85 条
[1]   Hierarchies, multiple energy barriers, and robustness govern the fracture mechanics of α-helical and β-sheet protein domains [J].
Ackbarow, Theodor ;
Chen, Xuefeng ;
Keten, Sinan ;
Buehler, Markus J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (42) :16410-16415
[2]   Contour length and refolding rate of a small protein controlled by engineered disulfide bonds [J].
Ainavarapu, Rama Koti ;
Brujic, Jasna ;
Huang, Hector H. ;
Wiita, Arun P. ;
Lu, Hui ;
Li, Lewyn ;
Walther, Kirstin A. ;
Carrion-Vazquez, Mariano ;
Li, Hongbin ;
Fernandez, Julio M. .
BIOPHYSICAL JOURNAL, 2007, 92 (01) :225-233
[3]   Single-molecule force spectroscopy measurements of bond elongation during a bimolecular reaction [J].
Ainavarapu, Sri Rama Koti ;
Wiita, Arun P. . ;
Dougan, Lorna ;
Uggerud, Einar ;
Fernandez, Julio M. . .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (20) :6479-6487
[4]  
BAGHURST PA, 1972, J BIOL CHEM, V247, P3198
[5]   HYDROGEN-BONDING IN GLOBULAR-PROTEINS [J].
BAKER, EN ;
HUBBARD, RE .
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 1984, 44 (02) :97-179
[6]  
BELL GI, 1978, SCIENCE, V200, P618, DOI 10.1126/science.347575
[7]   A DEUTERIUM ISOTOPE EFFECT ON EXCESS ENTHALPY OF METHANOL-WATER SOLUTIONS [J].
BENJAMIN, L ;
BENSON, GC .
JOURNAL OF PHYSICAL CHEMISTRY, 1963, 67 (04) :858-&
[8]   Mechanochemistry: The mechanical activation of covalent bonds [J].
Beyer, MK ;
Clausen-Schaumann, H .
CHEMICAL REVIEWS, 2005, 105 (08) :2921-2948
[9]   Single-molecule force spectroscopy reveals signatures of glassy dynamics in the energy landscape of ubiquitin [J].
Brujic, J ;
Hermans, RI ;
Walther, KA ;
Fernandez, JM .
NATURE PHYSICS, 2006, 2 (04) :282-286
[10]   Dwell-time distribution analysis of polyprotein unfolding using force-clamp spectroscopy [J].
Brujic, Jasna ;
Hermans, Rodolfo I. Z. ;
Garcia-Manyes, Sergi ;
Walther, Kirstin A. ;
Fernandez, Julio M. .
BIOPHYSICAL JOURNAL, 2007, 92 (08) :2896-2903