Effects of Hydrogen Bonding on the Rotational Dynamics of Water-Like Molecules in Liquids: Insights from Molecular Dynamics Simulations

被引:4
|
作者
Madhavi, W. A. Monika [1 ,2 ]
Weerasinghe, Samantha [3 ]
Momot, Konstantin, I [1 ]
机构
[1] Queensland Univ Technol QUT, Sch Chem & Phys, GPO Box 2434, Brisbane, Qld 4001, Australia
[2] Univ Colombo, Dept Phys, Colombo 03, Sri Lanka
[3] Univ Colombo, Dept Chem, Colombo 03, Sri Lanka
关键词
MAGNETIC-RESONANCE; NEUTRON-SCATTERING; REORIENTATION; RELAXATION; DIFFUSION; SULFIDE; SPECTROSCOPY; DIFFRACTION; MECHANISM; MOTION;
D O I
10.1071/CH19537
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Rotational motion of molecules plays an important role in determining NMR spin relaxation properties of liquids. The textbook theory of NMR spin relaxation predominantly uses the assumption that the reorientational dynamics of molecules is described by a continuous time rotational diffusion random walk with a single rotational diffusion coefficient. Previously we and others have shown that reorientation of water molecules on the timescales of picoseconds is not consistent with the Debye rotational-diffusion model. In particular, multiple timescales of molecular reorientation were observed in liquid water. This was attributed to the hydrogen bonding network in water and the consequent presence of collective rearrangements of the molecular network. In order to better understand the origins of the complex reorientational behaviour of water molecules, we carried out molecular dynamics (MD) simulations of a liquid that has a similar molecular geometry to water but does not form hydrogen bonds: hydrogen sulfide. These simulations were carried out at T=208K and p=1 atm (similar to 5K below the boiling point). Ensemble-averaged Legendre polynomial functions of hydrogen sulfide exhibited a Gaussian decay on the sub-picosecond timescale but, unlike water, did not exhibit oscillatory behaviour. We attribute these differences to hydrogen sulfide's absence of hydrogen bonding.
引用
收藏
页码:734 / 742
页数:9
相关论文
共 50 条
  • [31] Effect of osmolytes on the EcoRI endonuclease: Insights into hydration and protein dynamics from molecular dynamics simulations
    Diaz, Aathithya
    Ramakrishnan, Vigneshwar
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2023, 105
  • [32] Solvent effects on the decarboxylation of trichloroacetic acid: insights from ab initio molecular dynamics simulations
    da Silva, Guilherme C. Q.
    Cardozo, Thiago M.
    Amarante, Giovanni W.
    Abreu, Charlles R. A.
    Horta, Bruno A. C.
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2018, 20 (34) : 21988 - 21998
  • [33] Relationship between structural order and water-like anomalies in metastable liquid silicon: Ab initio molecular dynamics
    Zhao, G.
    Yan, J. L.
    Yu, Y. J.
    Ding, M. C.
    Zhao, X. G.
    Wang, H. Y.
    SCIENTIFIC REPORTS, 2017, 7
  • [34] Single Particle Dynamics at the Intrinsic Surface of Various Apolar, Aprotic Dipolar, and Hydrogen Bonding Liquids As Seen from Computer Simulations
    Fabian, Balazs
    Sega, Marcello
    Horvai, George
    Jedlovszky, Pal
    JOURNAL OF PHYSICAL CHEMISTRY B, 2017, 121 (22) : 5582 - 5594
  • [35] Adsorption of ciprofloxacin on carbon nanotubes: Insights from molecular dynamics simulations
    Veclani, Daniele
    Melchior, Andrea
    JOURNAL OF MOLECULAR LIQUIDS, 2020, 298
  • [36] Vibrational spectra and molecular dynamics of hydrogen peroxide molecules at quartz/water interfaces
    Lv, Ye-qing
    Zheng, Shi-li
    Wang, Shao-na
    Yan, Wen-yi
    Zhang, Yi
    Du, Hao
    JOURNAL OF MOLECULAR STRUCTURE, 2016, 1113 : 70 - 78
  • [37] Inter-residual Hydrogen Bonding in Carbohydrates Unraveled by NMR Spectroscopy and Molecular Dynamics Simulations
    Ronnols, Jerk
    Engstrom, Olof
    Schnupf, Udo
    Sawen, Elin
    Brady, John W.
    Widmalm, Goran
    CHEMBIOCHEM, 2019, 20 (19) : 2519 - 2528
  • [38] Analysis of Water Molecules in the Hras-GTP and GDP Complexes with Molecular Dynamics Simulations
    Miyakawa, Takeshi
    Morikawa, Ryota
    Takasu, Masako
    Dobashi, Akira
    Sugimori, Kimikazu
    Kawaguchi, Kazutomo
    Saito, Hiroaki
    Nagao, Hidemi
    ADVANCES IN QUANTUM METHODS AND APPLICATIONS IN CHEMISTRY, PHYSICS, AND BIOLOGY, 2013, 27 : 351 - 360
  • [39] Molecular insights into the oligomerization dynamics and conformations of amyloidogenic and non-amyloidogenic amylin from discrete molecular dynamics simulations
    Wang, Ying
    Liu, Yuying
    Zhang, Yu
    Wei, Guanghong
    Ding, Feng
    Sun, Yunxiang
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2022, 24 (36) : 21773 - 21785
  • [40] Geometries of hydrogen bonds in water-ethanol mixtures from ab initio molecular dynamics simulations
    Ghanghas, Ritu
    Vasudevan, Sukumaran
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2022, 24 (38) : 23570 - 23577