Refinement of macaque synteny arrangement with respect to the official rheMac2 macaque sequence assembly

被引：19

作者：

Roberto, Roberta ^{[1
]}

Misceo, Doriana ^{[1
]}

D'Addabbo, Pietro ^{[1
]}

Archidiacono, Nicoletta ^{[1
]}

Rocchi, Mariano ^{[1
]}

机构：

[1] Univ Bari, Dept Genet & Microbiol, I-70126 Bari, Italy

来源：

CHROMOSOME RESEARCH | 2008年 / 16卷 / 07期

关键词：

macaque genome; macaque sequence; macaque synteny assembly;

D O I：

10.1007/s10577-008-1255-1

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

We have compared the synteny block organization of the official macaque genome sequence assembly (Jan. 2006; rheMac2) with an independent assembly that used a molecular cytogenetic approach. The mapping of four synteny segments, ranging in size from 4 Mb to 24 Mb, was found to be inconsistent between the two datasets. We specifically investigated these discrepancies by appropriate co-hybridization FISH experiments with validated reference probes located outside the area under study. We found that in the macaque rheMac2 release three synteny segments were wrongly mapped and one segment was incorrectly oriented.

引用

页码：977 / 985

页数：9

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