Genomic DNA sequence and transcription factor binding sites of mouse Ninjurin

被引:4
|
作者
Moon, AR
Oh, GT
Kim, JW
Choi, YJ
Choe, IS [1 ]
机构
[1] Korea Res Inst Biosci & Biotechnol, Biosci Res Div, Cell Biol Lab, KRIBB, Yusong 305600, Daejon, South Korea
[2] Korea Res Inst Biosci & Biotechnol, Genet Resources Ctr, KRIBB, Yusong 305600, Daejon, South Korea
[3] Korea Univ, Grad Sch Biotechnol, Seoul 136701, South Korea
来源
DNA SEQUENCE | 2001年 / 12卷 / 5-6期
关键词
Ninjurin; genomic DNA; promoter; transcription factor;
D O I
10.3109/10425170109084463
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The complete genomic DNA sequence of mouse ninjurin gene has been cloned and sequenced by screening a bacterial artificial chromosome (BAC) library of mouse 129/SvJ genomic DNA. The mouse ninjurin gene comprises four exons and the translatable sequences are included in the first three exons. The putative promoter region of the mouse ninjurin gene lacks the consensus "CAAT" or "TATA" sequence. Nonetheless, it has demonstrated the promoter activity in transient transfection experiment using the construct containing putative promoter sequence of mouse ninjurin and reporter gene. The nucleotide sequence of the putative promoter region shows 83% homology with the corresponding DNA sequence of human ninjurin gene that had been previously reported, and reveals a high degree of conservation between the two species. Analysis of the DNA sequence identified the putative promoters and the binding sites for a variety of transcription factors of mouse ninjurin.
引用
收藏
页码:385 / 395
页数:11
相关论文
共 50 条
  • [1] Evolution of transcription factor DNA binding sites
    Kotelnikova, EA
    Makeev, VJ
    Gelfand, MS
    GENE, 2005, 347 (02) : 255 - 263
  • [2] FLEXIBLE STATISTICAL MODELLING OF THE OCCURRENCES OF TRANSCRIPTION FACTOR BINDING SITES ALONG A DNA SEQUENCE
    Kallah-Dagadu, G.
    Nkansah, B. K.
    Howard, N. K.
    ADVANCES AND APPLICATIONS IN STATISTICS, 2018, 53 (06) : 659 - 691
  • [3] Sequence features of DNA binding sites reveal structural class of associated transcription factor
    Narlikar, L
    Hartemink, AJ
    BIOINFORMATICS, 2006, 22 (02) : 157 - 163
  • [4] Predicting in-vitro Transcription Factor Binding Sites Using DNA Sequence plus Shape
    Zhang, Qinhu
    Shen, Zhen
    Huang, De-Shuang
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2021, 18 (02) : 667 - 676
  • [5] Identification of transcription factor binding sites in the human genome sequence
    Levy, S
    Hannenhalli, S
    MAMMALIAN GENOME, 2002, 13 (09) : 510 - 514
  • [6] Transcription factor binding sites prediction based on sequence similarity
    Sim, Jeong Seop
    Park, Soo-Jun
    FUZZY SYSTEMS AND KNOWLEDGE DISCOVERY, PROCEEDINGS, 2006, 4223 : 1058 - 1061
  • [7] Identification of transcription factor binding sites in the human genome sequence
    Samuel Levy
    Sridhar Hannenhalli
    Mammalian Genome, 2002, 13 : 510 - 514
  • [8] Evolution of transcription factor binding through sequence variations and turnover of binding sites
    Krieger, Gat
    Lupo, Offir
    Wittkopp, Patricia
    Barkai, Naama
    GENOME RESEARCH, 2022, 32 (06) : 1099 - 1111
  • [9] Using Sequence-Specific Chemical and Structural Properties of DNA to Predict Transcription Factor Binding Sites
    Bauer, Amy L.
    Hlavacek, William S.
    Unkefer, Pat J.
    Mu, Fangping
    PLOS COMPUTATIONAL BIOLOGY, 2010, 6 (11)
  • [10] Sequence-Based Prediction of Putative Transcription Factor Binding Sites in DNA Sequences of Any Length
    Lee, Wook
    Park, Byungkyu
    Han, Kyungsook
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2018, 15 (05) : 1461 - 1469