Apellis: An online tool for read-across model development

被引:4
作者
Varsou, Dimitra-Danai [1 ]
Sarimveis, Haralambos [1 ]
机构
[1] Natl Tech Univ Athens, Sch Chem Engn, Athens 15780, Greece
基金
欧盟地平线“2020”;
关键词
Engineered nanomaterials; Nanoinformatics; Read; -across; Grouping; CREDIBILITY; WORKSHOP;
D O I
10.1016/j.comtox.2020.100146
中图分类号
R99 [毒物学(毒理学)];
学科分类号
100405 ;
摘要
In this study, we present Apellis, a web application developed for training grouping/read-across models for the prediction of engineered nanomaterials (ENMs) toxicity-related endpoints. The application applies a generic and novel computational workflow for estimating the endpoint of interest, which can be either categorical or numerical. During the training procedure, the application selects the most important ENM properties of concern that affect their toxic behaviour. In the process of grouping ENMs for performing read-across predictions, the multi-perspective characterization of ENMs can be taken into account, by defining more than one similarity criteria. The workflow converges to the grouping hypothesis that leads to the most accurate read-across estimations. Visualisation tools are included in the application, which offer better and more clear understanding of grouping and similarities among ENMs. The trained models can be saved in an electronic format, so that they can be easily retrieved, for calculating new predictions. In addition, this allows model developers to disseminate and share the produced models with the community. Apellis is free to use and accessible at apellis.jaqpot.org.
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页数:10
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共 60 条
  • [1] Guidance on the establishment of the residue definition for dietary risk assessment
    Adriaanse, Paulien
    Brock, Theodorus
    Berny, Philippe
    Duquesne, Sabine
    Grilli, Sandro
    Hernandez-Jerez, Antonio F.
    Bennekou, Susanne Hougaard
    Klein, Michael
    Kuhl, Thomas
    Laskowski, Ryszard
    Machera, Kyriaki
    Ockleford, Colin
    Pelkonen, Olavi
    Pieper, Silvia
    Smith, Rob
    Stemmer, Michael
    Sundh, Ingvar
    Teodorovic, Ivana
    Aaldrik, Tiktak
    Topping, Chris J.
    Wolterink, Gerrit
    [J]. EFSA JOURNAL, 2016, 14 (12)
  • [2] Barriers to the Uptake of Human-based Test Methods, and How to Overcome Them
    Archibald, Kathy
    Drake, Tamara
    Coleman, Robert
    [J]. ATLA-ALTERNATIVES TO LABORATORY ANIMALS, 2015, 43 (05): : 301 - 308
  • [3] Constructing model credibility in the context of policy appraisal
    Aumann, Craig A.
    [J]. ENVIRONMENTAL MODELLING & SOFTWARE, 2011, 26 (03) : 258 - 265
  • [4] Mathematical modeling and analysis in biochemical engineering: Past accomplishments and future opportunities
    Bailey, JE
    [J]. BIOTECHNOLOGY PROGRESS, 1998, 14 (01) : 8 - 20
  • [5] Strategies to improve the regulatory assessment of developmental neurotoxicity (DNT) using in vitro methods
    Bal-Price, Anna
    Pistollato, Francesca
    Sachana, Magdalini
    Bopp, Stephanie K.
    Munn, Sharon
    Worth, Andrew
    [J]. TOXICOLOGY AND APPLIED PHARMACOLOGY, 2018, 354 : 7 - 18
  • [6] Recommendation on Test Readiness Criteria for New Approach Methods in Toxicology: Exemplified for Developmental Neurotoxicity
    Bal-Price, Anna
    Hogberg, Helena T.
    Crofton, Kevin M.
    Daneshian, Mardas
    FitzGerald, Rex E.
    Fritsche, Ellen
    Heinonen, Tuula
    Bennekou, Susanne Hougaard
    Klima, Stefanie
    Piersma, Aldert H.
    Sachana, Magdalini
    Shafer, Timothy J.
    Terron, Andrea
    Monnet-Tschudi, Florianne
    Viviani, Barbara
    Waldmann, Tanja
    Westerink, Remco H. S.
    Wilks, Martin F.
    Witters, Hilda
    Zurich, Marie-Gabrielle
    Leist, Marcel
    [J]. ALTEX-ALTERNATIVES TO ANIMAL EXPERIMENTATION, 2018, 35 (03) : 306 - 352
  • [7] Balci O, 1998, HANDBOOK OF SIMULATION, P335
  • [8] Verification, validation and accreditation of simulation models
    Balci, O
    [J]. PROCEEDINGS OF THE 1997 WINTER SIMULATION CONFERENCE, 1997, : 135 - 141
  • [9] BALLS M, 1990, ATLA-ALTERN LAB ANIM, V18, P313
  • [10] Balls M, 2019, HIST TOXICOL ENVIR, P307, DOI 10.1016/B978-0-12-813697-3.00033-0