Phenotypes from ancient DNA: Approaches, insights and prospects

被引:14
作者
Gonzalez Fortes, Gloria [1 ]
Speller, Camilla F. [1 ,2 ]
Hofreiter, Michael [1 ]
King, Turi E. [3 ]
机构
[1] Univ York, Dept Biol, York YO10 5DD, N Yorkshire, England
[2] Univ York, Dept Archaeol, York YO10 5DD, N Yorkshire, England
[3] Univ Leicester, Dept Genet, Sch Archaeol & Ancient Hist, Leicester LE1 7RH, Leics, England
关键词
ancient DNA; EVC; genotypes; HIrisPlex; NGS; phenotypes; COAT-COLOR POLYMORPHISM; LACTASE-PERSISTENCE; GENETIC-DETERMINANTS; SKIN PIGMENTATION; GENOME SEQUENCE; EYE COLOR; IDENTIFICATION; ALLELE; HAIR; POPULATION;
D O I
10.1002/bies.201300036
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The great majority of phenotypic characteristics are complex traits, complicating the identification of the genes underlying their expression. However, both methodological and theoretical progress in genome-wide association studies have resulted in a much better understanding of the underlying genetics of many phenotypic traits, including externally visible characteristics (EVCs) such as eye and hair color. Consequently, it has become possible to predict EVCs from human samples lacking phenotypic information. Predicting EVCs from genetic evidence is clearly appealing for forensic applications involving the personal identification of human remains. Now, a recent paper has reported the genetic determination of eye and hair color in samples up to 800 years old. The ability to predict EVCs from ancient human remains opens up promising perspectives for ancient DNA research, as this could allow studies to directly address archaeological and evolutionary questions related to the temporal and geographical origins of the genetic variants underlying phenotypes.
引用
收藏
页码:690 / 695
页数:6
相关论文
共 61 条
  • [1] Profiling the Dead: Generating Microsatellite Data from Fossil Bones of Extinct Megafauna-Protocols, Problems, and Prospects
    Allentoft, Morten E.
    Oskam, Charlotte
    Houston, Jayne
    Hale, Marie L.
    Gilbert, M. Thomas P.
    Rasmussen, Morten
    Spencer, Peter
    Jacomb, Christopher
    Willerslev, Eske
    Holdaway, Richard N.
    Bunce, Michael
    [J]. PLOS ONE, 2011, 6 (01):
  • [2] Targeted next-generation sequencing by specific capture of multiple genomic loci using low-volume microfluidic DNA arrays
    Bau, Stephan
    Schracke, Nadine
    Kranzle, Marcel
    Wu, Haiguo
    Stahler, Peer F.
    Hoheisel, Joerg D.
    Beier, Markus
    Summerer, Daniel
    [J]. ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2009, 393 (01) : 171 - 175
  • [3] The color loci of mice - A genetic century
    Bennett, DC
    Lamoreux, ML
    [J]. PIGMENT CELL RESEARCH, 2003, 16 (04): : 333 - 344
  • [4] A draft genome of Yersinia pestis from victims of the Black Death
    Bos, Kirsten I.
    Schuenemann, Verena J.
    Golding, G. Brian
    Burbano, Hernan A.
    Waglechner, Nicholas
    Coombes, Brian K.
    McPhee, Joseph B.
    DeWitte, Sharon N.
    Meyer, Matthias
    Schmedes, Sarah
    Wood, James
    Earn, David J. D.
    Herring, D. Ann
    Bauer, Peter
    Poinar, Hendrik N.
    Krause, Johannes
    [J]. NATURE, 2011, 478 (7370) : 506 - 510
  • [5] Pigment phenotype and biogeographical ancestry from ancient skeletal remains: inferences from multiplexed autosomal SNP analysis
    Bouakaze, Caroline
    Keyser, Christine
    Crubezy, Eric
    Montagnon, Daniel
    Ludes, Bertrand
    [J]. INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2009, 123 (04) : 315 - 325
  • [6] Model-based prediction of human hair color using DNA variants
    Branicki, Wojciech
    Liu, Fan
    van Duijn, Kate
    Draus-Barini, Jolanta
    Pospiech, Ewelina
    Walsh, Susan
    Kupiec, Tomasz
    Wojas-Pelc, Anna
    Kayser, Manfred
    [J]. HUMAN GENETICS, 2011, 129 (04) : 443 - 454
  • [7] Preferential access to genetic information from endogenous hominin ancient DNA and accurate quantitative SNP-typing via SPEX
    Brotherton, Paul
    Sanchez, Juan J.
    Cooper, Alan
    Endicott, Phillip
    [J]. NUCLEIC ACIDS RESEARCH, 2010, 38 (02) : e7.1 - e7.12
  • [8] Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture
    Burbano, Hernan A.
    Hodges, Emily
    Green, Richard E.
    Briggs, Adrian W.
    Krause, Johannes
    Meyer, Matthias
    Good, Jeffrey M.
    Maricic, Tomislav
    Johnson, Philip L. F.
    Xuan, Zhenyu
    Rooks, Michelle
    Bhattacharjee, Arindam
    Brizuela, Leonardo
    Albert, Frank W.
    de la Rasilla, Marco
    Fortea, Javier
    Rosas, Antonio
    Lachmann, Michael
    Hannon, Gregory J.
    Paeaebo, Svante
    [J]. SCIENCE, 2010, 328 (5979) : 723 - 725
  • [9] Absence of the lactase-persistence-associated allele in early Neolithic Europeans
    Burger, J.
    Kirchner, M.
    Bramanti, B.
    Haak, W.
    Thomas, M. G.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (10) : 3736 - 3741
  • [10] Burger J, 2011, HUMAN BIOARCHAEOLOGY OF THE TRANSITION TO AGRICULTURE, P371