Intelligent mechanisms in E. coli in processing carbon sources

被引:0
作者
Tian, Zhongyuan [1 ]
Matsuno, Hiroshi [1 ]
机构
[1] Yamaguchi Univ, Grad Sch Sci & Engn, 1677-1 Yoshida, Yamaguchi, Yamaguchi 7538512, Japan
来源
PROCEEDINGS OF INTERNATIONAL CONFERENCE ON ARTIFICIAL LIFE AND ROBOTICS (ICAROB 2014) | 2014年
关键词
chemotaxis; PTS; ATP; ppGpp; the central dogma; post translation; ESCHERICHIA-COLI; BACTERIAL CHEMOTAXIS; B-R; PROTEIN; GROWTH;
D O I
暂无
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
E. coli is "wise" enough to take suitable responding time, and suitable responding behaviors, when facing different kinds and intensities of stimulations. According to the time cost of a respond to a signal, we divide the intracellular processes into 2 levels: central dogma level and post translation level. The central dogma level includes the whole process of a gene transcribed to an mRNA then translated to a protein. The post translation level includes other intracellular process of non direct relation with genetic DNA or mRNA, for example protein-protein interaction, protein-metabolite interaction, protein localization, protein motion, etc. The time consuming for an action in the central dogma level is longer than that in the post translation level. In this study, firstly, we constructed a systematical network of glucose, PTS, glycogen and chemotaxis system, which was mediated by EI, HPr and ATP. This network plays a function as a switch, which controls E. coli's motion within the first few seconds. By using this switch, we unveiled a fact that the shorter time stimuli result in the post translation level reactions for quicker response. But further longer time stimuli will activate more time consuming the central dogma level reactions, that is this type of signals will be handled in the process of transcription or translation. Secondly, different intensities of signals result in different kinds of actions, was illustrated by ppGpp example. A low concentration ppGpp will cause RNAP express rRNA & table genes only; meanwhile, a high concentration ppGpp will cause RNAP express mRNA genes only. When E. coli is not in stringent occasion, without the binding of ppGpp, RNAP will express mRNA and other rRNA & stable genes in a proportion of 2:8. In all, a bacterium, like an E. coli, not only can identify different kinds of signals; but also can distinguish a signal's time-length and intensity, and then adopt different respond actions.
引用
收藏
页码:312 / 315
页数:4
相关论文
共 14 条
  • [11] Discretely calibrated regulatory loops controlled by ppGpp partition gene induction across the 'feast to famine' gradient in Escherichia coli
    Traxler, Matthew F.
    Zacharia, Vineetha M.
    Marquardt, Stafford
    Summers, Sean M.
    Nguyen, Huyen-Tran
    Stark, S. Elizabeth
    Conway, Tyrrell
    [J]. MOLECULAR MICROBIOLOGY, 2011, 79 (04) : 830 - 845
  • [12] Guanosine 3′,5′-bispyrophosphate coordinates global gene expression during glucose-lactose diauxie in Escherichia coli
    Traxler, MF
    Chang, DE
    Conway, T
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (07) : 2374 - 2379
  • [13] Wilson WA, 2010, FEMS MICROBIOLOGY RE
  • [14] POLYPEPTIDE-CHAIN-ELONGATION RATE IN ESCHERICHIA-COLI B-R AS A FUNCTION OF GROWTH-RATE
    YOUNG, R
    BREMER, H
    [J]. BIOCHEMICAL JOURNAL, 1976, 160 (02) : 185 - 194