共 93 条
Alternative Splicing in Self-Renewal of Embryonic Stem Cells
被引:9
作者:

Cheong, Clara Y.
论文数: 0 引用数: 0
h-index: 0
机构:
Genome Inst Singapore, Singapore 138672, Singapore Genome Inst Singapore, Singapore 138672, Singapore

Lufkin, Thomas
论文数: 0 引用数: 0
h-index: 0
机构:
Genome Inst Singapore, Singapore 138672, Singapore Genome Inst Singapore, Singapore 138672, Singapore
机构:
[1] Genome Inst Singapore, Singapore 138672, Singapore
关键词:
RIBOSOME ENTRY SITE;
MESSENGER-RNA DECAY;
POU-DOMAIN;
TRANSCRIPTIONAL REGULATION;
CHROMOSOMAL LOCATION;
PYRUVATE-KINASE;
SALL4;
ISOFORMS;
MOUSE EPIBLAST;
GENE STRUCTURE;
OCT4;
D O I:
10.4061/2011/560261
中图分类号:
Q813 [细胞工程];
学科分类号:
摘要:
Much of embryonic stem cell biology has focused on transcriptional expression and regulation of genes that could mediate its unique potential in self-renewal or pluripotency. In alignment with our present understanding on the genetic, protein, and epigenetic factors that may direct cell fate, we present a short overview of the often overlooked contribution of alternative splice variants to regulatory diversity. Progressing beyond the limitations of a fixed genomic sequence, alternative splicing offers an additional layer of complexity to produce protein variants that may differ in function and localization that can direct embryonic stem cells to specific differentiation pathways. In light of the number of variants that can be produced at key ES cell genes alone, it is challenging to consider how much more multifaceted transcriptional regulation truly is, and if this can be captured more fully in future works.
引用
收藏
页数:8
相关论文
共 93 条
[1]
Duane radial ray syndrome (Okihiro syndrome) maps to 20q13 and results from mutations in SALL4, a new member of the SAL family
[J].
Al-Baradie, R
;
Yamada, K
;
St Hilaire, C
;
Chan, WM
;
Andrews, C
;
McIntosh, N
;
Nakano, M
;
Martonyi, EJ
;
Raymond, WR
;
Okumura, S
;
Okihiro, MM
;
Engle, EC
.
AMERICAN JOURNAL OF HUMAN GENETICS,
2002, 71 (05)
:1195-1199

Al-Baradie, R
论文数: 0 引用数: 0
h-index: 0
机构: Childrens Hosp Boston, Dept Neurol, Div Genet, Boston, MA 02115 USA

论文数: 引用数:
h-index:
机构:

St Hilaire, C
论文数: 0 引用数: 0
h-index: 0
机构: Childrens Hosp Boston, Dept Neurol, Div Genet, Boston, MA 02115 USA

Chan, WM
论文数: 0 引用数: 0
h-index: 0
机构: Childrens Hosp Boston, Dept Neurol, Div Genet, Boston, MA 02115 USA

Andrews, C
论文数: 0 引用数: 0
h-index: 0
机构: Childrens Hosp Boston, Dept Neurol, Div Genet, Boston, MA 02115 USA

McIntosh, N
论文数: 0 引用数: 0
h-index: 0
机构: Childrens Hosp Boston, Dept Neurol, Div Genet, Boston, MA 02115 USA

Nakano, M
论文数: 0 引用数: 0
h-index: 0
机构: Childrens Hosp Boston, Dept Neurol, Div Genet, Boston, MA 02115 USA

Martonyi, EJ
论文数: 0 引用数: 0
h-index: 0
机构: Childrens Hosp Boston, Dept Neurol, Div Genet, Boston, MA 02115 USA

Raymond, WR
论文数: 0 引用数: 0
h-index: 0
机构: Childrens Hosp Boston, Dept Neurol, Div Genet, Boston, MA 02115 USA

Okumura, S
论文数: 0 引用数: 0
h-index: 0
机构: Childrens Hosp Boston, Dept Neurol, Div Genet, Boston, MA 02115 USA

Okihiro, MM
论文数: 0 引用数: 0
h-index: 0
机构: Childrens Hosp Boston, Dept Neurol, Div Genet, Boston, MA 02115 USA

Engle, EC
论文数: 0 引用数: 0
h-index: 0
机构: Childrens Hosp Boston, Dept Neurol, Div Genet, Boston, MA 02115 USA
[2]
OCT4B1, a novel spliced variant of OCT4, is highly expressed in gastric cancer and acts as an antiapoptotic factor
[J].
Asadi, Malek H.
;
Mowla, Seyed J.
;
Fathi, Fardin
;
Aleyasin, Ahmad
;
Asadzadeh, Jamshid
;
Atlasi, Yaser
.
INTERNATIONAL JOURNAL OF CANCER,
2011, 128 (11)
:2645-2652

Asadi, Malek H.
论文数: 0 引用数: 0
h-index: 0
机构:
Tarbiat Modares Univ, Fac Biol Sci, Dept Mol Genet, Tehran, Iran Tarbiat Modares Univ, Fac Biol Sci, Dept Mol Genet, Tehran, Iran

论文数: 引用数:
h-index:
机构:

Fathi, Fardin
论文数: 0 引用数: 0
h-index: 0
机构:
Kurdistan Univ Med Sci, Fac Med, Ctr Cellular & Mol Res, Sanandaj, Iran Tarbiat Modares Univ, Fac Biol Sci, Dept Mol Genet, Tehran, Iran

Aleyasin, Ahmad
论文数: 0 引用数: 0
h-index: 0
机构:
Natl Inst Genet Engn & Biotechnol, Dept Med Genet, Tehran, Iran Tarbiat Modares Univ, Fac Biol Sci, Dept Mol Genet, Tehran, Iran

论文数: 引用数:
h-index:
机构:

Atlasi, Yaser
论文数: 0 引用数: 0
h-index: 0
机构:
Tarbiat Modares Univ, Fac Biol Sci, Dept Mol Genet, Tehran, Iran Tarbiat Modares Univ, Fac Biol Sci, Dept Mol Genet, Tehran, Iran
[3]
OCT4 Spliced Variants Are Differentially Expressed in Human Pluripotent and Nonpluripotent Cells
[J].
Atlasi, Yaser
;
Mowla, Seyed J.
;
Ziaee, Seyed A. M.
;
Gokhale, Paul J.
;
Andrews, Peter W.
.
STEM CELLS,
2008, 26 (12)
:3068-3074

Atlasi, Yaser
论文数: 0 引用数: 0
h-index: 0
机构:
Tarbiat Modares Univ, Fac Basic Sci, Dept Genet, Tehran, Iran Univ Sheffield, Dept Biomed Sci, Ctr Stem Cell Biol, Western Bank, Sheffield S10 2TN, S Yorkshire, England

论文数: 引用数:
h-index:
机构:

论文数: 引用数:
h-index:
机构:

Gokhale, Paul J.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Sheffield, Dept Biomed Sci, Ctr Stem Cell Biol, Western Bank, Sheffield S10 2TN, S Yorkshire, England

Andrews, Peter W.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Sheffield, Dept Biomed Sci, Ctr Stem Cell Biol, Western Bank, Sheffield S10 2TN, S Yorkshire, England Univ Sheffield, Dept Biomed Sci, Ctr Stem Cell Biol, Western Bank, Sheffield S10 2TN, S Yorkshire, England
[4]
Human and mouse gene structure: Comparative analysis and application to exon prediction
[J].
Batzoglou, S
;
Pachter, L
;
Mesirov, JP
;
Berger, B
;
Lander, ES
.
GENOME RESEARCH,
2000, 10 (07)
:950-958

Batzoglou, S
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Comp Sci Lab, Cambridge, MA 02139 USA

Pachter, L
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Comp Sci Lab, Cambridge, MA 02139 USA

Mesirov, JP
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Comp Sci Lab, Cambridge, MA 02139 USA

Berger, B
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Comp Sci Lab, Cambridge, MA 02139 USA

Lander, ES
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Math, Berkeley, CA 94720 USA MIT, Comp Sci Lab, Cambridge, MA 02139 USA
[5]
Ultraconserved elements in the human genome
[J].
Bejerano, G
;
Pheasant, M
;
Makunin, I
;
Stephen, S
;
Kent, WJ
;
Mattick, JS
;
Haussler, D
.
SCIENCE,
2004, 304 (5675)
:1321-1325

Bejerano, G
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Santa Cruz, Dept Biomol Engn, Santa Cruz, CA 95064 USA Univ Calif Santa Cruz, Dept Biomol Engn, Santa Cruz, CA 95064 USA

论文数: 引用数:
h-index:
机构:

Makunin, I
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Cruz, Dept Biomol Engn, Santa Cruz, CA 95064 USA

Stephen, S
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Cruz, Dept Biomol Engn, Santa Cruz, CA 95064 USA

Kent, WJ
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Cruz, Dept Biomol Engn, Santa Cruz, CA 95064 USA

Mattick, JS
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Cruz, Dept Biomol Engn, Santa Cruz, CA 95064 USA

Haussler, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Cruz, Dept Biomol Engn, Santa Cruz, CA 95064 USA
[6]
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
[J].
Bernstein, BE
;
Mikkelsen, TS
;
Xie, XH
;
Kamal, M
;
Huebert, DJ
;
Cuff, J
;
Fry, B
;
Meissner, A
;
Wernig, M
;
Plath, K
;
Jaenisch, R
;
Wagschal, A
;
Feil, R
;
Schreiber, SL
;
Lander, ES
.
CELL,
2006, 125 (02)
:315-326

Bernstein, BE
论文数: 0 引用数: 0
h-index: 0
机构:
Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Mikkelsen, TS
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Xie, XH
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Kamal, M
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Huebert, DJ
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Cuff, J
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Fry, B
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Meissner, A
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Wernig, M
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Plath, K
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Jaenisch, R
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Wagschal, A
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Feil, R
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Schreiber, SL
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Lander, ES
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA
[7]
All Tcf HMG box transcription factors interact with Groucho-related co-repressors
[J].
Brantjes, H
;
Roose, J
;
van de Wetering, M
;
Clevers, H
.
NUCLEIC ACIDS RESEARCH,
2001, 29 (07)
:1410-1419

Brantjes, H
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Utrecht, Med Ctr, Dept Immunol, NL-3508 GA Utrecht, Netherlands Univ Utrecht, Med Ctr, Dept Immunol, NL-3508 GA Utrecht, Netherlands

Roose, J
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Utrecht, Med Ctr, Dept Immunol, NL-3508 GA Utrecht, Netherlands Univ Utrecht, Med Ctr, Dept Immunol, NL-3508 GA Utrecht, Netherlands

van de Wetering, M
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Utrecht, Med Ctr, Dept Immunol, NL-3508 GA Utrecht, Netherlands Univ Utrecht, Med Ctr, Dept Immunol, NL-3508 GA Utrecht, Netherlands

Clevers, H
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Utrecht, Med Ctr, Dept Immunol, NL-3508 GA Utrecht, Netherlands Univ Utrecht, Med Ctr, Dept Immunol, NL-3508 GA Utrecht, Netherlands
[8]
Derivation of pluripotent epiblast stem cells from mammalian embryos
[J].
Brons, I. Gabrielle M.
;
Smithers, Lucy E.
;
Trotter, Matthew W. B.
;
Rugg-Gunn, Peter
;
Sun, Bowen
;
de Sousa Lopes, Susana M. Chuva
;
Howlett, Sarah K.
;
Clarkson, Amanda
;
Ahrlund-Richter, Lars
;
Pedersen, Roger A.
;
Vallier, Ludovic
.
NATURE,
2007, 448 (7150)
:191-U7

Brons, I. Gabrielle M.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Addenbrookes Hosp, Dept Surg, Cambridge CB2 0XY, England

Smithers, Lucy E.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Addenbrookes Hosp, Dept Surg, Cambridge CB2 0XY, England

Trotter, Matthew W. B.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Addenbrookes Hosp, Dept Surg, Cambridge CB2 0XY, England

Rugg-Gunn, Peter
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Addenbrookes Hosp, Dept Surg, Cambridge CB2 0XY, England

Sun, Bowen
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Addenbrookes Hosp, Dept Surg, Cambridge CB2 0XY, England

de Sousa Lopes, Susana M. Chuva
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Addenbrookes Hosp, Dept Surg, Cambridge CB2 0XY, England

Howlett, Sarah K.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Addenbrookes Hosp, Dept Surg, Cambridge CB2 0XY, England

Clarkson, Amanda
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Addenbrookes Hosp, Dept Surg, Cambridge CB2 0XY, England

Ahrlund-Richter, Lars
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Addenbrookes Hosp, Dept Surg, Cambridge CB2 0XY, England

Pedersen, Roger A.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Cambridge, Addenbrookes Hosp, Dept Surg, Cambridge CB2 0XY, England

Vallier, Ludovic
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Cambridge, Addenbrookes Hosp, Dept Surg, Cambridge CB2 0XY, England Univ Cambridge, Addenbrookes Hosp, Dept Surg, Cambridge CB2 0XY, England
[9]
Global analysis of alternative splicing differences between humans and chimpanzees
[J].
Calarco, John A.
;
Xing, Yi
;
Caceres, Mario
;
Calarco, Joseph P.
;
Xiao, Xinshu
;
Pan, Qun
;
Lee, Christopher
;
Preuss, Todd M.
;
Blencowe, Benjamin J.
.
GENES & DEVELOPMENT,
2007, 21 (22)
:2963-2975

Calarco, John A.
论文数: 0 引用数: 0
h-index: 0
机构: Emory Univ, Dept Pathol, Div Neurosci, Atlanta, GA 30329 USA

Xing, Yi
论文数: 0 引用数: 0
h-index: 0
机构: Emory Univ, Dept Pathol, Div Neurosci, Atlanta, GA 30329 USA

Caceres, Mario
论文数: 0 引用数: 0
h-index: 0
机构: Emory Univ, Dept Pathol, Div Neurosci, Atlanta, GA 30329 USA

Calarco, Joseph P.
论文数: 0 引用数: 0
h-index: 0
机构: Emory Univ, Dept Pathol, Div Neurosci, Atlanta, GA 30329 USA

Xiao, Xinshu
论文数: 0 引用数: 0
h-index: 0
机构: Emory Univ, Dept Pathol, Div Neurosci, Atlanta, GA 30329 USA

Pan, Qun
论文数: 0 引用数: 0
h-index: 0
机构: Emory Univ, Dept Pathol, Div Neurosci, Atlanta, GA 30329 USA

Lee, Christopher
论文数: 0 引用数: 0
h-index: 0
机构: Emory Univ, Dept Pathol, Div Neurosci, Atlanta, GA 30329 USA

Preuss, Todd M.
论文数: 0 引用数: 0
h-index: 0
机构: Emory Univ, Dept Pathol, Div Neurosci, Atlanta, GA 30329 USA

Blencowe, Benjamin J.
论文数: 0 引用数: 0
h-index: 0
机构:
Emory Univ, Dept Pathol, Div Neurosci, Atlanta, GA 30329 USA Emory Univ, Dept Pathol, Div Neurosci, Atlanta, GA 30329 USA
[10]
Oct-4 mRNA and protein expression during human preimplantation development
[J].
Cauffman, G
;
Van de Velde, H
;
Liebaers, I
;
Van Steirteghem, A
.
MOLECULAR HUMAN REPRODUCTION,
2005, 11 (03)
:173-181

Cauffman, G
论文数: 0 引用数: 0
h-index: 0
机构:
Free Univ Brussels, Univ Hosp & Med Sch, Res Ctr Genet & Reprod, B-1090 Brussels, Belgium Free Univ Brussels, Univ Hosp & Med Sch, Res Ctr Genet & Reprod, B-1090 Brussels, Belgium

Van de Velde, H
论文数: 0 引用数: 0
h-index: 0
机构:
Free Univ Brussels, Univ Hosp & Med Sch, Res Ctr Genet & Reprod, B-1090 Brussels, Belgium Free Univ Brussels, Univ Hosp & Med Sch, Res Ctr Genet & Reprod, B-1090 Brussels, Belgium

Liebaers, I
论文数: 0 引用数: 0
h-index: 0
机构:
Free Univ Brussels, Univ Hosp & Med Sch, Res Ctr Genet & Reprod, B-1090 Brussels, Belgium Free Univ Brussels, Univ Hosp & Med Sch, Res Ctr Genet & Reprod, B-1090 Brussels, Belgium

Van Steirteghem, A
论文数: 0 引用数: 0
h-index: 0
机构:
Free Univ Brussels, Univ Hosp & Med Sch, Res Ctr Genet & Reprod, B-1090 Brussels, Belgium Free Univ Brussels, Univ Hosp & Med Sch, Res Ctr Genet & Reprod, B-1090 Brussels, Belgium