Alternative Splicing in Self-Renewal of Embryonic Stem Cells

被引:9
作者
Cheong, Clara Y. [1 ]
Lufkin, Thomas [1 ]
机构
[1] Genome Inst Singapore, Singapore 138672, Singapore
关键词
RIBOSOME ENTRY SITE; MESSENGER-RNA DECAY; POU-DOMAIN; TRANSCRIPTIONAL REGULATION; CHROMOSOMAL LOCATION; PYRUVATE-KINASE; SALL4; ISOFORMS; MOUSE EPIBLAST; GENE STRUCTURE; OCT4;
D O I
10.4061/2011/560261
中图分类号
Q813 [细胞工程];
学科分类号
摘要
Much of embryonic stem cell biology has focused on transcriptional expression and regulation of genes that could mediate its unique potential in self-renewal or pluripotency. In alignment with our present understanding on the genetic, protein, and epigenetic factors that may direct cell fate, we present a short overview of the often overlooked contribution of alternative splice variants to regulatory diversity. Progressing beyond the limitations of a fixed genomic sequence, alternative splicing offers an additional layer of complexity to produce protein variants that may differ in function and localization that can direct embryonic stem cells to specific differentiation pathways. In light of the number of variants that can be produced at key ES cell genes alone, it is challenging to consider how much more multifaceted transcriptional regulation truly is, and if this can be captured more fully in future works.
引用
收藏
页数:8
相关论文
共 93 条
[1]   Duane radial ray syndrome (Okihiro syndrome) maps to 20q13 and results from mutations in SALL4, a new member of the SAL family [J].
Al-Baradie, R ;
Yamada, K ;
St Hilaire, C ;
Chan, WM ;
Andrews, C ;
McIntosh, N ;
Nakano, M ;
Martonyi, EJ ;
Raymond, WR ;
Okumura, S ;
Okihiro, MM ;
Engle, EC .
AMERICAN JOURNAL OF HUMAN GENETICS, 2002, 71 (05) :1195-1199
[2]   OCT4B1, a novel spliced variant of OCT4, is highly expressed in gastric cancer and acts as an antiapoptotic factor [J].
Asadi, Malek H. ;
Mowla, Seyed J. ;
Fathi, Fardin ;
Aleyasin, Ahmad ;
Asadzadeh, Jamshid ;
Atlasi, Yaser .
INTERNATIONAL JOURNAL OF CANCER, 2011, 128 (11) :2645-2652
[3]   OCT4 Spliced Variants Are Differentially Expressed in Human Pluripotent and Nonpluripotent Cells [J].
Atlasi, Yaser ;
Mowla, Seyed J. ;
Ziaee, Seyed A. M. ;
Gokhale, Paul J. ;
Andrews, Peter W. .
STEM CELLS, 2008, 26 (12) :3068-3074
[4]   Human and mouse gene structure: Comparative analysis and application to exon prediction [J].
Batzoglou, S ;
Pachter, L ;
Mesirov, JP ;
Berger, B ;
Lander, ES .
GENOME RESEARCH, 2000, 10 (07) :950-958
[5]   Ultraconserved elements in the human genome [J].
Bejerano, G ;
Pheasant, M ;
Makunin, I ;
Stephen, S ;
Kent, WJ ;
Mattick, JS ;
Haussler, D .
SCIENCE, 2004, 304 (5675) :1321-1325
[6]   A bivalent chromatin structure marks key developmental genes in embryonic stem cells [J].
Bernstein, BE ;
Mikkelsen, TS ;
Xie, XH ;
Kamal, M ;
Huebert, DJ ;
Cuff, J ;
Fry, B ;
Meissner, A ;
Wernig, M ;
Plath, K ;
Jaenisch, R ;
Wagschal, A ;
Feil, R ;
Schreiber, SL ;
Lander, ES .
CELL, 2006, 125 (02) :315-326
[7]   All Tcf HMG box transcription factors interact with Groucho-related co-repressors [J].
Brantjes, H ;
Roose, J ;
van de Wetering, M ;
Clevers, H .
NUCLEIC ACIDS RESEARCH, 2001, 29 (07) :1410-1419
[8]   Derivation of pluripotent epiblast stem cells from mammalian embryos [J].
Brons, I. Gabrielle M. ;
Smithers, Lucy E. ;
Trotter, Matthew W. B. ;
Rugg-Gunn, Peter ;
Sun, Bowen ;
de Sousa Lopes, Susana M. Chuva ;
Howlett, Sarah K. ;
Clarkson, Amanda ;
Ahrlund-Richter, Lars ;
Pedersen, Roger A. ;
Vallier, Ludovic .
NATURE, 2007, 448 (7150) :191-U7
[9]   Global analysis of alternative splicing differences between humans and chimpanzees [J].
Calarco, John A. ;
Xing, Yi ;
Caceres, Mario ;
Calarco, Joseph P. ;
Xiao, Xinshu ;
Pan, Qun ;
Lee, Christopher ;
Preuss, Todd M. ;
Blencowe, Benjamin J. .
GENES & DEVELOPMENT, 2007, 21 (22) :2963-2975
[10]   Oct-4 mRNA and protein expression during human preimplantation development [J].
Cauffman, G ;
Van de Velde, H ;
Liebaers, I ;
Van Steirteghem, A .
MOLECULAR HUMAN REPRODUCTION, 2005, 11 (03) :173-181