The fourth-corner solution - using predictive models to understand how species traits interact with the environment

被引:221
作者
Brown, Alexandra M. [1 ,2 ]
Warton, David I. [1 ,2 ]
Andrew, Nigel R. [3 ]
Binns, Matthew [3 ]
Cassis, Gerasimos [2 ,4 ]
Gibb, Heloise [5 ]
机构
[1] Univ New S Wales, Sch Math & Stat, Sydney, NSW 2052, Australia
[2] Univ New S Wales, Evolut & Ecol Res Ctr, Sydney, NSW 2052, Australia
[3] Univ New England, Ctr Behav & Physiol Ecol, Discipline Zool, Sch Environm & Rural Sci, Armidale, NSW 2351, Australia
[4] Univ New S Wales, Sch Biol Earth & Environm Sci, Sydney, NSW 2052, Australia
[5] La Trobe Univ, Dept Zool, Melbourne, Vic 3068, Australia
来源
METHODS IN ECOLOGY AND EVOLUTION | 2014年 / 5卷 / 04期
基金
澳大利亚研究理事会;
关键词
RLQ analysis; predictive modelling; species distribution model; LASSO; fourth-corner problem; multivariate analysis; environment-trait association; PLANT TRAITS; DISTRIBUTIONS; GRADIENTS;
D O I
10.1111/2041-210X.12163
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
An important problem encountered by ecologists in species distribution modelling (SDM) and in multivariate analysis is that of understanding why environmental responses differ across species, and how differences are mediated by functional traits. We describe a simple, generic approach to this problem - the core idea being to fit a predictive model for species abundance (or presence/absence) as a function of environmental variables, species traits and their interaction. We show that this method can be understood as a model-based approach to the fourth-corner problem - the problem of studying the environment-trait association using matrices of abundance or presence/absence data across species, environmental data across sites and trait data across species. The matrix of environment-trait interaction coefficients is the fourth corner. We illustrate that compared with existing approaches to the fourth-corner problem, the proposed model-based approach has advantages in interpretability and its capacity to perform model selection and make predictions. To illustrate the method we used a generalized linear model with a LASSO penalty, fitted to data sets from four different studies requiring different models, illustrating the flexibility of the proposed approach. Predictive performance of the model is compared with that of fitting SDMs separately to each species, and in each case, it is shown that the trait model, despite being much simpler, had comparable predictive performance, even significantly outperforming separate SDMs in some cases.
引用
收藏
页码:344 / 352
页数:9
相关论文
共 45 条
  • [1] [Anonymous], 2011, R: A Language and Environment for Statistical Computing
  • [2] [Anonymous], 2002, Model selection and multimodel inference: a practical informationtheoretic approach
  • [3] [Anonymous], 2006, Randomization, bootstrap and Monte Carlo methods in biology
  • [4] Brown A., 2010, THESIS U NEW S WALES
  • [5] Chessel D., 2004, R NEWS, V4, P5, DOI DOI 10.2307/3780087
  • [6] Matching species traits to environmental variables: A new three-table ordination method
    Doledec, S
    Chessel, D
    terBraak, CJF
    Champely, S
    [J]. ENVIRONMENTAL AND ECOLOGICAL STATISTICS, 1996, 3 (02) : 143 - 166
  • [7] TESTING THE SPECIES TRAITS-ENVIRONMENT RELATIONSHIPS: THE FOURTH-CORNER PROBLEM REVISITED
    Dray, Stephane
    Legendre, Pierre
    [J]. ECOLOGY, 2008, 89 (12) : 3400 - 3412
  • [8] Model based grouping of species across environmental gradients
    Dunstan, Piers K.
    Foster, Scott D.
    Darnell, Ross
    [J]. ECOLOGICAL MODELLING, 2011, 222 (04) : 955 - 963
  • [9] Novel methods improve prediction of species' distributions from occurrence data
    Elith, J
    Graham, CH
    Anderson, RP
    Dudík, M
    Ferrier, S
    Guisan, A
    Hijmans, RJ
    Huettmann, F
    Leathwick, JR
    Lehmann, A
    Li, J
    Lohmann, LG
    Loiselle, BA
    Manion, G
    Moritz, C
    Nakamura, M
    Nakazawa, Y
    Overton, JM
    Peterson, AT
    Phillips, SJ
    Richardson, K
    Scachetti-Pereira, R
    Schapire, RE
    Soberón, J
    Williams, S
    Wisz, MS
    Zimmermann, NE
    [J]. ECOGRAPHY, 2006, 29 (02) : 129 - 151
  • [10] Species Distribution Models: Ecological Explanation and Prediction Across Space and Time
    Elith, Jane
    Leathwick, John R.
    [J]. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS, 2009, 40 : 677 - 697