Stability of designed proteins against mutations

被引:34
作者
Broglia, RA
Tiana, G
Roman, HE
Vigezzi, E
Shakhnovich, E
机构
[1] Univ Milan, Dipartimento Fis, I-20133 Milan, Italy
[2] Ist Nazl Fis Nucl, Sezione Milano, I-20133 Milan, Italy
[3] Univ Copenhagen, Niels Bohr Inst, DK-2100 Copenhagen, Denmark
[4] Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA
关键词
D O I
10.1103/PhysRevLett.82.4727
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
The stability of model proteins with designed sequences is assessed in terms of the number of sequences, obtained from the designed sequence through mutations? which fold into the "native" conformation. By a complete enumeration of the sequences obtained by introducing up to four point mutations and up to seven composition-conserving mutations (swapping of amino acids) in a 36mers chain and by running dynamic simulations on the mutated sequences, it is found that this number depends on the gap between the native conformation and the bulk of misfolded conformations, but not on the particular designed sequence, provided its associated energy gap is large. [S0031-9007(99)09339-4].
引用
收藏
页码:4727 / 4730
页数:4
相关论文
共 38 条
[1]   FREE-ENERGY LANDSCAPE FOR PROTEIN-FOLDING KINETICS - INTERMEDIATES, TRAPS, AND MULTIPLE PATHWAYS IN THEORY AND LATTICE MODEL SIMULATIONS [J].
ABKEVICH, VI ;
GUTIN, AM ;
SHAKHNOVICH, EI .
JOURNAL OF CHEMICAL PHYSICS, 1994, 101 (07) :6052-6062
[2]   SPECIFIC NUCLEUS AS THE TRANSITION-STATE FOR PROTEIN-FOLDING - EVIDENCE FROM THE LATTICE MODEL [J].
ABKEVICH, VI ;
GUTIN, AM ;
SHAKHNOVICH, EI .
BIOCHEMISTRY, 1994, 33 (33) :10026-10036
[3]  
BORNBERGBAUER E, 1997, BIOPHYS J, V73, P2392
[4]   A METHOD TO IDENTIFY PROTEIN SEQUENCES THAT FOLD INTO A KNOWN 3-DIMENSIONAL STRUCTURE [J].
BOWIE, JU ;
LUTHY, R ;
EISENBERG, D .
SCIENCE, 1991, 253 (5016) :164-170
[5]  
BROGLIA RA, IN PRESS
[6]   FUNNELS, PATHWAYS, AND THE ENERGY LANDSCAPE OF PROTEIN-FOLDING - A SYNTHESIS [J].
BRYNGELSON, JD ;
ONUCHIC, JN ;
SOCCI, ND ;
WOLYNES, PG .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1995, 21 (03) :167-195
[7]   WHEN IS A POTENTIAL ACCURATE ENOUGH FOR STRUCTURE PREDICTION - THEORY AND APPLICATION TO A RANDOM HETEROPOLYMER MODEL OF PROTEIN-FOLDING [J].
BRYNGELSON, JD .
JOURNAL OF CHEMICAL PHYSICS, 1994, 100 (08) :6038-6045
[8]  
Creighton TE., 1992, PROTEINS STRUCTURE M, V2nd Edn
[9]   FOLDED PROTEINS OCCUR FREQUENTLY IN LIBRARIES OF RANDOM AMINO-ACID-SEQUENCES [J].
DAVIDSON, AR ;
SAUER, RT .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (06) :2146-2150
[10]   Monte Carlo simulations of protein folding using inexact potentials: How accurate must parameters be in order to preserve the essential features of the energy landscape? [J].
deAraujo, AFP ;
Pochapsky, TC .
FOLDING & DESIGN, 1996, 1 (04) :299-314