共 32 条
Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks
被引:231
作者:

Patil, A
论文数: 0 引用数: 0
h-index: 0
机构: Osaka Univ, Inst Prot Res, Suita, Osaka 5650871, Japan

Nakamura, H
论文数: 0 引用数: 0
h-index: 0
机构: Osaka Univ, Inst Prot Res, Suita, Osaka 5650871, Japan
机构:
[1] Osaka Univ, Inst Prot Res, Suita, Osaka 5650871, Japan
[2] Osaka Univ, Grad Sch Sci, Dept Biol, Suita, Osaka 565, Japan
来源:
FEBS LETTERS
|
2006年
/
580卷
/
08期
关键词:
protein-protein interactions;
interaction networks;
hubs;
disordered regions;
surface charge;
D O I:
10.1016/j.febslet.2006.03.003
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
We investigate the structural properties of hubs that enable them to interact with several partners in protein-protein interaction networks. We find that hubs have more observed and predicted disordered residues with fewer loops/coils, and more charged residues on the surface as compared to non-hubs. Smaller hubs have fewer disordered residues and more charged residues on the surface than larger hubs. We conclude that the global flexibility provided by disordered domains, and high surface charge are complementary factors that play a significant role in the binding ability of hubs. (c) 2006 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.
引用
收藏
页码:2041 / 2045
页数:5
相关论文
共 32 条
[1]
Network biology:: Understanding the cell's functional organization
[J].
Barabási, AL
;
Oltvai, ZN
.
NATURE REVIEWS GENETICS,
2004, 5 (02)
:101-U15

Barabási, AL
论文数: 0 引用数: 0
h-index: 0
机构: Univ Notre Dame, Dept Phys, Notre Dame, IN 46556 USA

Oltvai, ZN
论文数: 0 引用数: 0
h-index: 0
机构: Univ Notre Dame, Dept Phys, Notre Dame, IN 46556 USA
[2]
The Protein Data Bank
[J].
Berman, HM
;
Westbrook, J
;
Feng, Z
;
Gilliland, G
;
Bhat, TN
;
Weissig, H
;
Shindyalov, IN
;
Bourne, PE
.
NUCLEIC ACIDS RESEARCH,
2000, 28 (01)
:235-242

Berman, HM
论文数: 0 引用数: 0
h-index: 0
机构: Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA

Westbrook, J
论文数: 0 引用数: 0
h-index: 0
机构: Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA

Feng, Z
论文数: 0 引用数: 0
h-index: 0
机构: Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA

Gilliland, G
论文数: 0 引用数: 0
h-index: 0
机构: Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA

Bhat, TN
论文数: 0 引用数: 0
h-index: 0
机构: Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA

Weissig, H
论文数: 0 引用数: 0
h-index: 0
机构: Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA

Shindyalov, IN
论文数: 0 引用数: 0
h-index: 0
机构: Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA

Bourne, PE
论文数: 0 引用数: 0
h-index: 0
机构: Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA
[3]
Combining prediction, computation and experiment for the characterization of protein disorder
[J].
Bracken, C
;
Iakoucheva, LM
;
Rorner, PR
;
Dunker, AK
.
CURRENT OPINION IN STRUCTURAL BIOLOGY,
2004, 14 (05)
:570-576

Bracken, C
论文数: 0 引用数: 0
h-index: 0
机构: Cornell Univ, Dept Biochem, Weill Med Coll, New York, NY 10021 USA

Iakoucheva, LM
论文数: 0 引用数: 0
h-index: 0
机构: Cornell Univ, Dept Biochem, Weill Med Coll, New York, NY 10021 USA

Rorner, PR
论文数: 0 引用数: 0
h-index: 0
机构: Cornell Univ, Dept Biochem, Weill Med Coll, New York, NY 10021 USA

Dunker, AK
论文数: 0 引用数: 0
h-index: 0
机构: Cornell Univ, Dept Biochem, Weill Med Coll, New York, NY 10021 USA
[4]
The N-terminal domain of p53 is natively unfolded
[J].
Dawson, R
;
Müller, L
;
Dehner, A
;
Klein, C
;
Kessler, H
;
Buchner, J
.
JOURNAL OF MOLECULAR BIOLOGY,
2003, 332 (05)
:1131-1141

Dawson, R
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Inst Organ Chem & Biochem, D-85747 Garching, Germany

Müller, L
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Inst Organ Chem & Biochem, D-85747 Garching, Germany

Dehner, A
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Inst Organ Chem & Biochem, D-85747 Garching, Germany

Klein, C
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Inst Organ Chem & Biochem, D-85747 Garching, Germany

Kessler, H
论文数: 0 引用数: 0
h-index: 0
机构: Tech Univ Munich, Inst Organ Chem & Biochem, D-85747 Garching, Germany

Buchner, J
论文数: 0 引用数: 0
h-index: 0
机构:
Tech Univ Munich, Inst Organ Chem & Biochem, D-85747 Garching, Germany Tech Univ Munich, Inst Organ Chem & Biochem, D-85747 Garching, Germany
[5]
Flexible nets - The roles of intrinsic disorder in protein interaction networks
[J].
Dunker, AK
;
Cortese, MS
;
Romero, P
;
Iakoucheva, LM
;
Uversky, VN
.
FEBS JOURNAL,
2005, 272 (20)
:5129-5148

Dunker, AK
论文数: 0 引用数: 0
h-index: 0
机构: Indiana Univ, Sch Med, Dept Biochem & Mol Biol, Indianapolis, IN 46202 USA

Cortese, MS
论文数: 0 引用数: 0
h-index: 0
机构: Indiana Univ, Sch Med, Dept Biochem & Mol Biol, Indianapolis, IN 46202 USA

Romero, P
论文数: 0 引用数: 0
h-index: 0
机构: Indiana Univ, Sch Med, Dept Biochem & Mol Biol, Indianapolis, IN 46202 USA

Iakoucheva, LM
论文数: 0 引用数: 0
h-index: 0
机构: Indiana Univ, Sch Med, Dept Biochem & Mol Biol, Indianapolis, IN 46202 USA

Uversky, VN
论文数: 0 引用数: 0
h-index: 0
机构: Indiana Univ, Sch Med, Dept Biochem & Mol Biol, Indianapolis, IN 46202 USA
[6]
Intrinsically disordered protein
[J].
Dunker, AK
;
Lawson, JD
;
Brown, CJ
;
Williams, RM
;
Romero, P
;
Oh, JS
;
Oldfield, CJ
;
Campen, AM
;
Ratliff, CR
;
Hipps, KW
;
Ausio, J
;
Nissen, MS
;
Reeves, R
;
Kang, CH
;
Kissinger, CR
;
Bailey, RW
;
Griswold, MD
;
Chiu, M
;
Garner, EC
;
Obradovic, Z
.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING,
2001, 19 (01)
:26-59

Dunker, AK
论文数: 0 引用数: 0
h-index: 0
机构:
Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Lawson, JD
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Brown, CJ
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Williams, RM
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Romero, P
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Oh, JS
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Oldfield, CJ
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Campen, AM
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Ratliff, CR
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Hipps, KW
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Ausio, J
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Nissen, MS
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Reeves, R
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Kang, CH
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Kissinger, CR
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Bailey, RW
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Griswold, MD
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Chiu, M
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Garner, EC
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA

Obradovic, Z
论文数: 0 引用数: 0
h-index: 0
机构: Washington State Univ, Sch Mol Biosci, Pullman, WA 99164 USA
[7]
Intrinsically unstructured proteins and their functions
[J].
Dyson, HJ
;
Wright, PE
.
NATURE REVIEWS MOLECULAR CELL BIOLOGY,
2005, 6 (03)
:197-208

Dyson, HJ
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA

Wright, PE
论文数: 0 引用数: 0
h-index: 0
机构: Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
[8]
Binding of Rad51 and other peptide sequences to a promiscuous, highly electrostatic binding site in p53
[J].
Friedler, A
;
Veprintsev, DB
;
Rutherford, T
;
von Glos, KI
;
Fersht, AR
.
JOURNAL OF BIOLOGICAL CHEMISTRY,
2005, 280 (09)
:8051-8059

Friedler, A
论文数: 0 引用数: 0
h-index: 0
机构:
MRC, Cambridge Ctr Prot Engn, Cambridge CB2 2QH, England MRC, Cambridge Ctr Prot Engn, Cambridge CB2 2QH, England

Veprintsev, DB
论文数: 0 引用数: 0
h-index: 0
机构:
MRC, Cambridge Ctr Prot Engn, Cambridge CB2 2QH, England MRC, Cambridge Ctr Prot Engn, Cambridge CB2 2QH, England

Rutherford, T
论文数: 0 引用数: 0
h-index: 0
机构:
MRC, Cambridge Ctr Prot Engn, Cambridge CB2 2QH, England MRC, Cambridge Ctr Prot Engn, Cambridge CB2 2QH, England

von Glos, KI
论文数: 0 引用数: 0
h-index: 0
机构:
MRC, Cambridge Ctr Prot Engn, Cambridge CB2 2QH, England MRC, Cambridge Ctr Prot Engn, Cambridge CB2 2QH, England

Fersht, AR
论文数: 0 引用数: 0
h-index: 0
机构:
MRC, Cambridge Ctr Prot Engn, Cambridge CB2 2QH, England MRC, Cambridge Ctr Prot Engn, Cambridge CB2 2QH, England
[9]
A protein interaction map of Drosophila melanogaster
[J].
Giot, L
;
Bader, JS
;
Brouwer, C
;
Chaudhuri, A
;
Kuang, B
;
Li, Y
;
Hao, YL
;
Ooi, CE
;
Godwin, B
;
Vitols, E
;
Vijayadamodar, G
;
Pochart, P
;
Machineni, H
;
Welsh, M
;
Kong, Y
;
Zerhusen, B
;
Malcolm, R
;
Varrone, Z
;
Collis, A
;
Minto, M
;
Burgess, S
;
McDaniel, L
;
Stimpson, E
;
Spriggs, F
;
Williams, J
;
Neurath, K
;
Ioime, N
;
Agee, M
;
Voss, E
;
Furtak, K
;
Renzulli, R
;
Aanensen, N
;
Carrolla, S
;
Bickelhaupt, E
;
Lazovatsky, Y
;
DaSilva, A
;
Zhong, J
;
Stanyon, CA
;
Finley, RL
;
White, KP
;
Braverman, M
;
Jarvie, T
;
Gold, S
;
Leach, M
;
Knight, J
;
Shimkets, RA
;
McKenna, MP
;
Chant, J
;
Rothberg, JM
.
SCIENCE,
2003, 302 (5651)
:1727-1736

Giot, L
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Bader, JS
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Brouwer, C
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Chaudhuri, A
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Kuang, B
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Li, Y
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Hao, YL
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Ooi, CE
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Godwin, B
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Vitols, E
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Vijayadamodar, G
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Pochart, P
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Machineni, H
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Welsh, M
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Kong, Y
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Zerhusen, B
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Malcolm, R
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Varrone, Z
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Collis, A
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Minto, M
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Burgess, S
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

McDaniel, L
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Stimpson, E
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Spriggs, F
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Williams, J
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Neurath, K
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Ioime, N
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Agee, M
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Voss, E
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Furtak, K
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Renzulli, R
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Aanensen, N
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Carrolla, S
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Bickelhaupt, E
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Lazovatsky, Y
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

DaSilva, A
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Zhong, J
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Stanyon, CA
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Finley, RL
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

White, KP
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Braverman, M
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Jarvie, T
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Gold, S
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Leach, M
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Knight, J
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Shimkets, RA
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

McKenna, MP
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Chant, J
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA

Rothberg, JM
论文数: 0 引用数: 0
h-index: 0
机构: GuraGen Corp, New Haven, CT 06511 USA
[10]
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
[J].
Han, JDJ
;
Bertin, N
;
Hao, T
;
Goldberg, DS
;
Berriz, GF
;
Zhang, LV
;
Dupuy, D
;
Walhout, AJM
;
Cusick, ME
;
Roth, FP
;
Vidal, M
.
NATURE,
2004, 430 (6995)
:88-93

Han, JDJ
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dana Farber Canc Inst, Ctr Canc Syst Biol, Boston, MA 02115 USA

Bertin, N
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dana Farber Canc Inst, Ctr Canc Syst Biol, Boston, MA 02115 USA

Hao, T
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dana Farber Canc Inst, Ctr Canc Syst Biol, Boston, MA 02115 USA

Goldberg, DS
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dana Farber Canc Inst, Ctr Canc Syst Biol, Boston, MA 02115 USA

Berriz, GF
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dana Farber Canc Inst, Ctr Canc Syst Biol, Boston, MA 02115 USA

Zhang, LV
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dana Farber Canc Inst, Ctr Canc Syst Biol, Boston, MA 02115 USA

论文数: 引用数:
h-index:
机构:

Walhout, AJM
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dana Farber Canc Inst, Ctr Canc Syst Biol, Boston, MA 02115 USA

Cusick, ME
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dana Farber Canc Inst, Ctr Canc Syst Biol, Boston, MA 02115 USA

Roth, FP
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dana Farber Canc Inst, Ctr Canc Syst Biol, Boston, MA 02115 USA

Vidal, M
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Sch Med, Dana Farber Canc Inst, Ctr Canc Syst Biol, Boston, MA 02115 USA