Pathview: an R/Bioconductor package for pathway-based data integration and visualization

被引：1517

作者：

Luo, Weijun ^{[1
,2
]}

Brouwer, Cory ^{[1
,2
]}

机构：

[1] UNC Charlotte, Dept Bioinformat & Genom, Charlotte, NC 28223 USA

[2] UNC Charlotte, Dept Bioinformat & Genom, Kannapolis, NC 28081 USA

来源：

BIOINFORMATICS | 2013年 / 29卷 / 14期

关键词：

KEGG;

D O I：

10.1093/bioinformatics/btt285

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Pathview is a novel tool set for pathway-based data integration and visualization. It maps and renders user data on relevant pathway graphs. Users only need to supply their data and specify the target pathway. Pathview automatically downloads the pathway graph data, parses the data file, maps and integrates user data onto the pathway and renders pathway graphs with the mapped data. Although built as a stand-alone program, Pathview may seamlessly integrate with pathway and functional analysis tools for large-scale and fully automated analysis pipelines.

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收藏

页码：1830 / 1831

页数：2

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