Parameter sensitivity analysis of stochastic models: Application to catalytic reaction networks

被引:9
作者
Damiani, Chiara [1 ]
Filisetti, Alessandro [2 ]
Graudenzi, Alex [3 ]
Lecca, Paola [1 ]
机构
[1] Univ Trento, COSBI Microsoft Res, Ctr Computat & Syst Biol, I-38068 Rovereto, TN, Italy
[2] Univ Bologna, CIRI Energy & Environm, I-42123 Reggio Emilia, Italy
[3] Univ Milano Bicocca, Dipartimento Informat Sistemist & Comunicaz, I-20126 Milan, Italy
关键词
Sensitivity coefficient; Stochastic modeling; Protocell; Catalytic reaction networks; NATURAL SELF-ORGANIZATION; AUTOCATALYTIC SETS; SYNCHRONIZATION; HYPERCYCLE; PRINCIPLE; ORIGIN;
D O I
10.1016/j.compbiolchem.2012.10.007
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
A general numerical methodology for parametric sensitivity analysis is proposed, which allows to determine the parameters exerting the greatest influence on the output of a stochastic computational model, especially when the knowledge about the actual value of a parameter is insufficient. An application of the procedure is performed on a model of protocell, in order to detect the kinetic rates mainly affecting the capability of a catalytic reaction network enclosed in a semi-permeable membrane to retain material from its environment and to generate a variety of molecular species within its boundaries. It is shown that the former capability is scarcely sensitive to variations in the model parameters, whereas a kinetic rate responsible for profound modifications of the latter can be identified and it depends on the specific reaction network. A faster uptaking of limited resources from the environment may have represented a significant advantage from an evolutionary point of view and this result is a first indication in order to decipher which kind of structures are more suitable to achieve a viable evolution. (C) 2012 Elsevier Ltd. All rights reserved.
引用
收藏
页码:5 / 17
页数:13
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