Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom

被引:149
作者
Morris, R. M. [1 ]
Longnecker, K.
Giovannoni, S. J.
机构
[1] Cornell Univ, Dept Microbiol, Ithaca, NY 14853 USA
[2] Oregon State Univ, Coll Ocean & Atmospher Sci, Corvallis, OR 97331 USA
[3] Oregon State Univ, Dept Microbiol, Corvallis, OR 97331 USA
关键词
D O I
10.1111/j.1462-2920.2006.01029.x
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Although bacterioplankton and phytoplankton are generally perceived as closely linked in marine systems, specific interactions between discrete bacterioplankton and phytoplankton populations are largely unknown. However, measurements of bacterioplankton distributions during phytoplankton blooms may indicate specific microbial lineages that are responding to phytoplankton populations, and potentially controlling them by producing allelopathic compounds. Here we use a comprehensive molecular approach to identify, characterize and quantify bacterioplankton community responses to an Oregon coast diatom bloom. Total DAPI counts increased by nearly sevenfold in bloom samples, reaching 5.7 x 10(9) cells l(-1), and lineage-specific cell counts using fluorescence in situ hybridization (FISH) indicated that Bacteria accounted for approximately 89% of observed increases. Several dominant members of the bacterial community present outside the bloom (SAR11 and SAR86) did not contribute significantly to observed increases in bloom samples. Clone library and FISH data indicated that uncultured planctomycetes most closely related to Pirellula, and members of the OM43 clade of beta proteobacteria, reached 0.5 x 10(8) and 1.2 x 10(8) cells l(-1), respectively, and were among the dominant lineages in bloom samples.
引用
收藏
页码:1361 / 1370
页数:10
相关论文
共 42 条
[1]   Fine-scale phylogenetic architecture of a complex bacterial community [J].
Acinas, SG ;
Klepac-Ceraj, V ;
Hunt, DE ;
Pharino, C ;
Ceraj, I ;
Distel, DL ;
Polz, MF .
NATURE, 2004, 430 (6999) :551-554
[2]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[3]   THE ECOLOGICAL ROLE OF WATER-COLUMN MICROBES IN THE SEA [J].
AZAM, F ;
FENCHEL, T ;
FIELD, JG ;
GRAY, JS ;
MEYERREIL, LA ;
THINGSTAD, F .
MARINE ECOLOGY PROGRESS SERIES, 1983, 10 (03) :257-263
[4]   Development of clade- (Roseobacter and Alteromonas) and taxon-specific oligonucleotide probes to study interactions between toxic dinoflagellates and their associated bacteria [J].
Brinkmeyer, R ;
Rappé, M ;
Gallacher, S ;
Medlin, L .
EUROPEAN JOURNAL OF PHYCOLOGY, 2000, 35 (04) :315-329
[5]   Organic carbon partitioning during spring phytoplankton blooms in the Ross Sea polynya and the Sargasso Sea [J].
Carlson, CA ;
Ducklow, HW ;
Hansell, DA ;
Smith, WO .
LIMNOLOGY AND OCEANOGRAPHY, 1998, 43 (03) :375-386
[6]   BACTERIAL PRODUCTION IN FRESH AND SALTWATER ECOSYSTEMS - A CROSS-SYSTEM OVERVIEW [J].
COLE, JJ ;
FINDLAY, S ;
PACE, ML .
MARINE ECOLOGY PROGRESS SERIES, 1988, 43 (1-2) :1-10
[7]   Respiration rates in bacteria exceed phytoplankton production in unproductive aquatic systems [J].
delGiorgio, PA ;
Cole, JJ ;
Cimbleris, A .
NATURE, 1997, 385 (6612) :148-151
[8]   PHYLOGENETIC DIVERSITY OF AGGREGATE-ATTACHED VS FREE-LIVING MARINE BACTERIAL ASSEMBLAGES [J].
DELONG, EF ;
FRANKS, DG ;
ALLDREDGE, AL .
LIMNOLOGY AND OCEANOGRAPHY, 1993, 38 (05) :924-934
[9]   PRODUCTION AND FATE OF BACTERIA IN THE OCEANS [J].
DUCKLOW, HW .
BIOSCIENCE, 1983, 33 (08) :494-501
[10]   Culturability and in situ abundance of pelagic bacteria from the North Sea [J].
Eilers, H ;
Pernthaler, J ;
Glöckner, FO ;
Amann, R .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2000, 66 (07) :3044-3051