ESPript:: analysis of multiple sequence alignments in PostScript

被引：2594
|
作者：
Gouet, P
Courcelle, E
Stuart, DI
Métoz, F
机构：
[1] Inst Pharmacol & Biol Struct, Grp Cristallog Biol, F-31077 Toulouse, France
[2] Lab Mol Biophys, Oxford OX1 3QU, England
[3] Oxford Ctr Mol Sci, Oxford OX1 3QT, England
[4] Inst Biol Struct, F-38027 Grenoble, France
来源：
BIOINFORMATICS | 1999年 / 15卷 / 04期
关键词：
D O I：
10.1093/bioinformatics/15.4.305
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Motivation: The program ESPript (Easy Sequencing in PostScript) allows the rapid visualization, via PostScript output, of sequences aligned with popular programs such as CLUSTAL-W or GCG PILEUP. It can read secondary structure files (such as that created by the program DSSP) to produce a synthesis of both sequence and structural information. Results: ESPript can be run via a command file or a friendly html-based user interface. The program calculates an homology score by columns of residues and can sort this calculation by groups of sequences. It offers a palette of markers to highlight important regions in the alignment. ESPript can also paste information on residue conservation into coordinate files, for subsequent visualization with a graphics program.
引用
收藏
页码：305 / 308
页数：4
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