Stability analysis of uncertain genetic sum regulatory networks

被引:92
作者
Chesi, G. [1 ]
Hung, Y. S. [1 ]
机构
[1] Univ Hong Kong, Dept Elect & Elect Engn, Hong Kong, Hong Kong, Peoples R China
关键词
genetic regulatory network; systems biology; robust stability; Lyapunov function; LMI;
D O I
10.1016/j.automatica.2008.01.030
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
This paper addresses the problem of establishing robust stability of uncertain genetic networks with sum regulatory functions. Specifically, we first consider uncertain genetic networks where the regulation occurs at the transcriptional level, and we derive a sufficient condition for robust stability by introducing a bounding set of the uncertain nonlinearity. We hence show that this condition can be formulated as a convex optimization through polynomial Lyapunov functions and polynomial descriptions of the bounding set by exploiting the square matricial representation (SMR) of polynomials which allows to establish whether a polynomial is a sum of squares (SOS) via a linear matrix inequality (LMI). Then, we propose a method for computing a family of bounding sets by means of convex optimizations. It is worthwhile to remark that these results are derived in spite of the fact that the variable equilibrium point cannot be computed as being the solution of a system of parameter-dependent nonlinear equations, and is hence unknown. Lastly, the proposed approach is extended to models where the regulation occurs at different levels and both mRNA and protein dynamics are nonlinear. (c) 2008 Elsevier Ltd. All rights reserved.
引用
收藏
页码:2298 / 2305
页数:8
相关论文
共 21 条
[1]  
ALURU S, 2005, COMPUTER INFORM SCI
[2]   Modelling periodic oscillation of biological systems with multiple timescale networks [J].
不详 .
SYSTEMS BIOLOGY, 2004, 1 (01) :71-84
[3]   Revising regulatory networks: from expression data to linear causal models [J].
Bay, SD ;
Shrager, J ;
Pohorille, A ;
Langley, P .
JOURNAL OF BIOMEDICAL INFORMATICS, 2002, 35 (5-6) :289-297
[4]   Robust stability of time-varying polytopic systems via parameter-dependent homogeneous Lyapunov functions [J].
Chesi, G. ;
Garulli, A. ;
Tesi, A. ;
Vicino, A. .
AUTOMATICA, 2007, 43 (02) :309-316
[5]   Polynomially parameter-dependent Lyapunov functions for robust stability of polytopic systems: An LMI approach [J].
Chesi, G ;
Garulli, A ;
Tesi, A ;
Vicino, A .
IEEE TRANSACTIONS ON AUTOMATIC CONTROL, 2005, 50 (03) :365-370
[6]   Estimating the domain of attraction for uncertain polynomial systems [J].
Chesi, G .
AUTOMATICA, 2004, 40 (11) :1981-1986
[7]   Robust stability of polytopic systems via polynomially parameter-dependent Lyapunov functions [J].
Chesi, G ;
Garulli, A ;
Tesi, A ;
Vicino, A .
42ND IEEE CONFERENCE ON DECISION AND CONTROL, VOLS 1-6, PROCEEDINGS, 2003, :4670-4675
[8]   Homogeneous Lyapunov functions for systems with structured uncertainties [J].
Chesi, G ;
Garulli, A ;
Tesi, A ;
Vicino, A .
AUTOMATICA, 2003, 39 (06) :1027-1035
[9]   Solving quadratic distance problems: An LMI-based approach [J].
Chesi, G ;
Garulli, A ;
Tesi, A ;
Vicino, A .
IEEE TRANSACTIONS ON AUTOMATIC CONTROL, 2003, 48 (02) :200-212
[10]  
CHESI G, 1999, 5 EUR CONTR C KARLSR