Fiji: an open-source platform for biological-image analysis

被引：36

作者：

Schindelin, Johannes ^{[1
]}

Arganda-Carreras, Ignacio ^{[2
]}

Frise, Erwin ^{[3
]}

Kaynig, Verena ^{[4
]}

Longair, Mark ^{[5
]}

Pietzsch, Tobias ^{[1
]}

Preibisch, Stephan ^{[1
]}

Rueden, Curtis ^{[6
]}

Saalfeld, Stephan ^{[1
]}

Schmid, Benjamin ^{[7
]}

Tinevez, Jean-Yves ^{[8
]}

White, Daniel James ^{[1
]}

Hartenstein, Volker ^{[9
]}

Eliceiri, Kevin ^{[6
]}

Tomancak, Pavel ^{[1
]}

Cardona, Albert ^{[5
]}

机构：

[1] Max Planck Inst Mol Cell Biol & Genet, Dresden, Germany

[2] MIT, Dept Brain & Cognit Sci, Cambridge, MA 02139 USA

[3] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Dept Genome Dynam, Berkeley Drosophila Genome Project, Berkeley, CA 94720 USA

[4] Swiss Fed Inst Technol Zurich, Dept Comp Sci, Zurich, Switzerland

[5] Univ Zurich, Inst Neuroinformat, Zurich, Switzerland

[6] Univ Wisconsin, Lab Opt & Computat Instrumentat, Madison, WI USA

[7] Univ Wurzburg, Dept Neurobiol & Genet, Wurzburg, Germany

[8] Inst Pasteur, Paris, France

[9] Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA USA

来源：

NATURE METHODS | 2012年 / 9卷 / 07期

基金：

美国国家卫生研究院; 欧洲研究理事会;

关键词：

3D VISUALIZATION; GENE-EXPRESSION; REGISTRATION; RECONSTRUCTION; DROSOPHILA; SOFTWARE; GENOME; ATLAS;

D O I：

10.1038/NMETH.2019

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Fiji is a distribution of the popular open-source software I ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into I ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.

引用

页码：676 / 682

页数：7

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