Pusillimonas maritima sp. nov., isolated from surface seawater

被引:8
作者
Li, Jianyang [1 ,2 ,3 ,4 ]
Qi, Mingming [1 ]
Lai, Qiliang [2 ,3 ,4 ]
Dong, Chunming [2 ,3 ,4 ]
Liu, Xiupian [2 ,3 ,4 ]
Wang, Guangyi [1 ]
Shao, Zongze [2 ,3 ,4 ]
机构
[1] Tianjin Univ, Sch Environm Sci & Engn, Tianjin 300350, Peoples R China
[2] Minist Nat Resources PR China, Inst Oceanog 3, Key Lab Marine Genet Resources, Xiamen 361005, Peoples R China
[3] State Key Lab Breeding Base Marine Genet Resource, Xiamen 361005, Peoples R China
[4] Fujian Key Lab Marine Genet Resources, Xiamen 361005, Peoples R China
关键词
Pusillimonas maritima; polyphasic taxonomy; surface seawater; SPECIES DEFINITION; GEN; NOV; QUALITY; MEMBER;
D O I
10.1099/ijsem.0.004202
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Two Gram-stain-negative, short rod-shaped and non-flagellated strains, designated 17-4A(T )and L52-1-41, were isolated from the surface seawater of the Indian Ocean and South China Sea, respectively. The 165 rRNA genes of the two strains shared sequence similarity of 99.45%. Strain 17-4A(T) shared the highest 16S rRNA gene similarity of 98.02% with Pusillimonas caeni EBR-8-1(T), followed by Pusillimonas noertemannii BN9(T )(97.47%), Pusillimonas soli MJ07(T) (96.93%), Parapusillimonas granuli Ch07(T) (96.68%), Pusillimonas ginsengisoli DCY25(T )(96.65%), Eoetvoesia caeni PB3-7B(T) (96.63%), Paracandidimonas caeni 24(T) (96.34%), Castellaniella defragrans 54Pin(T) (96.28%) and Pusillimonas harenae B201(T) (96.05%). L52-1-41 shared the highest 16S rRNA gene similarity of 97.74% with Pusillimonas caeni EBR-8-1(T), followed by Pusillimonas noertemannii BN9(T) (97.47%), Pusillimonas soli MJ07(T) (96.65%), Parapusillimonas granuli Ch07(T) (96.41%), Pusillimonas ginsengisoli DCY25(T) (96.37%), Eoetvoesia caeni PB3-7B(T) (96.35%), Pusillimonas harenae 6201(T) (96.28%), and Paracandidimonas caeni 24(T) (96.06%). The results of phylogenetic analyses indicated that 17-4A(T) and L52-1-41 formed a stable, distinct and highly supported lineage affiliated to the genus Pusillimonas. The results of the digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) analyses indicated that they represented a single species. They featured similar genomic DNA G+C contents of 53.2-53.4 mol%. Activities of catalase and oxidase were negative for both strains. The fatty acids patterns of 17-4A(T) and L52-1-41 were most similar, mostly comprised of C-16:0, Co-17:0 cycio, C-18:0, C-18:1 omega 9c and summed feature 8 (C-18:1, omega 7c and/or C18:1 omega 6c). The major polar lipids of the two strains were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and unidentified aminolipids. The respiratory quinone of the two strains was Q-8. Hence, on the basis of the phenotypic, chemotaxonomic and genotypic data presented in this study, we proposed the classification of both strains as representatives of a novel species named Pusillimonas maritima sp. nov., with the type strain 17-4A(T) (=MCCC 1A12670(T)=KCTC 62121(T)=NBRC 113794(T)), and another strain L52-1-41 (=MCCC 1A05046=KCTC 52313).
引用
收藏
页码:3483 / 3490
页数:8
相关论文
共 34 条
[1]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[2]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[3]   Discrimination of members of the family Pasteurellaceae based on polyamine patterns [J].
Busse, HJ ;
Bunka, S ;
Hensel, A ;
Lubitz, W .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1997, 47 (03) :698-708
[4]  
BUSSE J, 1988, SYST APPL MICROBIOL, V11, P1
[5]  
Collins MD, 1985, CHEM METHODS BACTERI, P267
[6]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[7]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
[8]   QUAST: quality assessment tool for genome assemblies [J].
Gurevich, Alexey ;
Saveliev, Vladislav ;
Vyahhi, Nikolay ;
Tesler, Glenn .
BIOINFORMATICS, 2013, 29 (08) :1072-1075
[9]   Enrichment, isolation, and phylogenetic identification of polycyclic aromatic hydrocarbon-degrading bacteria from Elizabeth River sediments [J].
Hilyard, Edward J. ;
Jones-Meehan, Joanne M. ;
Spargo, Barry J. ;
Hill, Russell T. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2008, 74 (04) :1176-1182
[10]   Characterization and phylogenetic analysis of biodemulsifier-producing bacteria [J].
Huang, Xiang-Feng ;
Guan, Wei ;
Liu, Jia ;
Lu, Li-Jun ;
Xu, Jing-Cheng ;
Zhou, Qi .
BIORESOURCE TECHNOLOGY, 2010, 101 (01) :317-323