Resolution advances in cryo-EM enable application to drug discovery

被引:74
作者
Subramaniam, Sriram [1 ]
Earl, Lesley A. [1 ]
Falconieri, Veronica [1 ]
Milne, Jacqueline L. S. [1 ]
Egelman, Edward H. [2 ]
机构
[1] NCI, Cell Biol Lab, Ctr Canc Res, NIH, Bethesda, MD 20892 USA
[2] Univ Virginia, Charlottesville, VA 22908 USA
基金
美国国家卫生研究院;
关键词
U4/U6.U5; TRI-SNRNP; ANGSTROM RESOLUTION; ELECTRON CRYOMICROSCOPY; CRYOELECTRON MICROSCOPY; ATOMIC-STRUCTURE; TRPV1; STRUCTURES; MECHANISM; ACTIVATION; INHIBITION; REVEALS;
D O I
10.1016/j.sbi.2016.07.009
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The prospect that the structures of protein assemblies, small and large, can be determined using cryo-electron microscopy (cryo-EM) is beginning to transform the landscape of structural biology and cell biology. Great progress is being made in determining 3D structures of biological assemblies ranging from icosahedral viruses and helical arrays to small membrane proteins and protein complexes. Here, we review recent advances in this field, focusing especially on the emerging use of cryo-EM in mapping the binding of drugs and inhibitors to protein targets, an application that requires structure determination at the highest possible resolutions. We discuss methods used to evaluate the information contained in cryoEM density maps and consider strengths and weaknesses of approaches currently used to measure map resolution.
引用
收藏
页码:194 / 202
页数:9
相关论文
共 58 条
[1]   Atomic model of the F420-reducing [NiFe] hydrogenase by electron cryo-microscopy using a direct electron detector [J].
Allegretti, Matteo ;
Mills, Deryck J. ;
McMullan, Greg ;
Kuehlbrandt, Werner ;
Vonck, Janet .
ELIFE, 2014, 3
[2]   Structure of the Yeast Mitochondrial Large Ribosomal Subunit [J].
Amunts, Alexey ;
Brown, Alan ;
Bai, Xiao-chen ;
Llacer, Jose L. ;
Hussain, Tanweer ;
Emsley, Paul ;
Long, Fei ;
Murshudov, Garib ;
Scheres, Sjors H. W. ;
Ramakrishnan, V. .
SCIENCE, 2014, 343 (6178) :1485-1489
[3]   Structures of the human and Drosophila 80S ribosome [J].
Anger, Andreas M. ;
Armache, Jean-Paul ;
Berninghausen, Otto ;
Habeck, Michael ;
Subklewe, Marion ;
Wilson, Daniel N. ;
Beckmann, Roland .
NATURE, 2013, 497 (7447) :80-+
[4]   Sampling the conformational space of the catalytic subunit of human γ-secretase [J].
Bai, Xiao-chen ;
Rajendra, Eeson ;
Yang, Guanghui ;
Shi, Yigong ;
Scheres, Sjors H. W. .
ELIFE, 2015, 4
[5]   An atomic structure of human γ-secretase [J].
Bai, Xiao-chen ;
Yan, Chuangye ;
Yang, Guanghui ;
Lu, Peilong ;
Ma, Dan ;
Sun, Linfeng ;
Zhou, Rui ;
Scheres, Sjors H. W. ;
Shi, Yigong .
NATURE, 2015, 525 (7568) :212-+
[6]   Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles [J].
Bai, Xiao-chen ;
Fernandez, Israel S. ;
McMullan, Greg ;
Scheres, Sjors H. W. .
ELIFE, 2013, 2
[7]   2.3 Å resolution cryo-EM structure of human p97 and mechanism of allosteric inhibition [J].
Banerjee, Soojay ;
Bartesaghi, Alberto ;
Merk, Alan ;
Rao, Prashant ;
Bulfer, Stacie L. ;
Yan, Yongzhao ;
Green, Neal ;
Mroczkowski, Barbara ;
Neitz, R. Jeffrey ;
Wipf, Peter ;
Falconieri, Veronica ;
Deshaies, Raymond J. ;
Milne, Jacqueline L. S. ;
Huryn, Donna ;
Arkin, Michelle ;
Subramaniam, Sriram .
SCIENCE, 2016, 351 (6275) :871-875
[8]   2.2 Å resolution cryo-EM structure of β-galactosidase in complex with a cell-permeant inhibitor [J].
Bartesaghi, Alberto ;
Merk, Alan ;
Banerjee, Soojay ;
Matthies, Doreen ;
Wu, Xiongwu ;
Milne, Jacqueline L. S. ;
Subramaniam, Sriram .
SCIENCE, 2015, 348 (6239) :1147-1151
[9]   Visualization of α-helical features in a density map constructed using 9 molecular images of the 1.8 MDa icosahedral core of pyruvate dehydrogenase [J].
Borgnia, MJ ;
Shi, D ;
Zhang, PJ ;
Milne, JLS .
JOURNAL OF STRUCTURAL BIOLOGY, 2004, 147 (02) :136-145
[10]   2.8 Å resolution reconstruction of the Thermoplasma acidophilum 20S proteasome using cryo-electron microscopy [J].
Campbell, Melody G. ;
Veesler, David ;
Cheng, Anchi ;
Potter, Clinton S. ;
Carragher, Bridget .
ELIFE, 2015, 4 :1-22