The complete mitochondrial genome sequence of Coilia ectenes (Clupeiformes: Engraulidae)

被引：31

作者：

Qiao, Huiying ^{[1
,2
]}

Cheng, Qiqun ^{[1
]}

Chen, Ying ^{[1
,2
]}

Chen, Wenming ^{[1
,2
]}

Zhu, Yuxia ^{[1
,2
]}

机构：

[1] Chinese Acad Fishery Sci, East China Sea Fisheries Res Inst, Minist Agr, Key Lab East China Sea & Ocean Fishery Resources, Shanghai 200090, Peoples R China

[2] Shanghai Ocean Univ, Coll Marine Sci, Shanghai 201306, Peoples R China

来源：

MITOCHONDRIAL DNA | 2013年 / 24卷 / 02期

基金：

中国国家自然科学基金;

关键词：

Coilia ectenes; mitochondrial genome; population history; conservation genetics; phylogeography; CYTOCHROME-B GENE; PHYLOGENETIC-RELATIONSHIPS; TAIHUENSIS;

D O I：

10.3109/19401736.2012.731405

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

In this paper, the complete mitochondrial DNA (mtDNA) sequence of Coilia ectenes was determined. The complete mtDNA genome sequence of C. ectenes is 16,852 bp in length. It consists of 13 protein-coding genes, 22 transfer RNA genes, two rRNA genes and two non-coding regions. Overall base composition of mitogenome is estimated to be 31.15% for A, 27.18% for C, 15.58% forGand 26.10% for T, respectively, with a high A + T content (57.25%). The complete mitogenome of the C. ectenes can provide a basic data for the studies on population history, molecular systematics, phylogeography, stock evaluation and conservation genetics. It is also helpful to the reasonable utilization and development of rational management strategies for C. ectenes resource.

引用

页码：123 / 125

页数：3

共 16 条

[1] The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA [J].

Broughton, RE ;

Milam, JE ;

Roe, BA .

GENOME RESEARCH, 2001, 11 (11) :1958-1967

[2] Phylogenetic studies of three sinipercid fishes (Perciformes: Sinipercidae) based on complete mitochondrial DNA sequences [J].

Chen, Dun-Xue ;

Chu, Wu-Ying ;

Liu, Xi-Liang ;

Nong, Xiao-Xian ;

Li, Yu-Long ;

Du, Shao-Jun ;

Zhang, Jian-She .

MITOCHONDRIAL DNA, 2012, 23 (02) :70-76

[3] A preliminary genetic distinctness of four Coilia fishes (Clupeiformes: Engraulidae) inferred from mitochondrial DNA sequences [J].

Cheng, Q. ;

Cheng, H. ;

Wang, L. ;

Zhong, Y. ;

Lu, D. .

RUSSIAN JOURNAL OF GENETICS, 2008, 44 (03) :339-343

[4]

Cheng Qiqun, 2006, Hupo Kexue, V18, P425

[5]

Cheng Qiqun, 2004, Hupo Kexue, V16, P356

[6] PCR-RFLP analysis of cytochrome b gene does not support Coilia ectenes taihuensis being a subspecies of Coilia ectenes [J].

Cheng, QQ ;

Lu, DR .

JOURNAL OF GENETICS, 2005, 84 (03) :307-310

[7] The complete mitochondrial DNA sequence of the Mekong giant catfish (Pangasianodon gigas), and the phylogenetic relationships among Siluriformes [J].

Jondeung, Amnuay ;

Sangthong, Pradit ;

Zardoya, Rafael .

GENE, 2007, 387 (1-2) :49-57

[8]

Jordan D.A., 1905, P US NATL MUS, V293, P517

[9] Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences [J].

Lavoue, Sebastien ;

Miya, Masaki ;

Saitoh, Kenji ;

Ishiguro, Naoya B. ;

Nishida, Mutsumi .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2007, 43 (03) :1096-1105

[10]

Liu H, 1976, J NANJING U NATURAL, V2, P1

← 1 2 →