Oscillatory dynamics in a gene regulatory network mediated by small RNA with time delay

被引:17
作者
Liu, Haihong [1 ]
Yan, Fang [1 ]
Liu, Zengrong [2 ,3 ]
机构
[1] Yunnan Normal Univ, Dept Math, Kunming 650092, Peoples R China
[2] Shanghai Univ, Inst Syst Biol, Shanghai 200444, Peoples R China
[3] Shanghai Univ, Dept Math, Shanghai 200444, Peoples R China
基金
中国国家自然科学基金;
关键词
Small RNA; Time delay; Hopf bifurcation; Periodic solution; Oscillator; HOPF-BIFURCATION; EXPRESSION; STABILITY;
D O I
10.1007/s11071-013-1117-z
中图分类号
TH [机械、仪表工业];
学科分类号
0802 ;
摘要
A genetic regulatory network mediated by small RNA with two time delays is investigated. We show by mathematical analysis and simulation that time delays can provide a mechanism for the intracellular oscillator. By linearizing the system at the positive equilibrium and analyzing the associated characteristic equation, the asymptotic stability of the positive equilibrium is investigated and Hopf bifurcations are demonstrated. Furthermore, the direction of Hopf bifurcation and the stability of the bifurcating periodic solutions are determined by the normal form theory and the center manifold theorem for functional differential equations. Finally, some numerical simulations are carried out for illustrating the theoretical results.
引用
收藏
页码:147 / 159
页数:13
相关论文
共 26 条
[1]   The functions of animal microRNAs [J].
Ambros, V .
NATURE, 2004, 431 (7006) :350-355
[2]   MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004) [J].
Bartel, David P. .
CELL, 2007, 131 (04) :11-29
[3]  
Chen L., 2009, BIOMOLECULAR NETWORK, DOI DOI 10.1002/9780470488065
[4]   Micros for microbes: non-coding regulatory RNAs in bacteria [J].
Gottesman, S .
TRENDS IN GENETICS, 2005, 21 (07) :399-404
[5]  
Hale J.K., 1977, THEORY FUNCTIONAL DI
[6]  
Hassard B.D., 1981, Theory and Applications of Hopf Bifurcation
[7]   Quantitative characteristics of gene regulation by small RNA [J].
Levine, Erel ;
Zhang, Zhongge ;
Kuhlman, Thomas ;
Hwa, Terence .
PLOS BIOLOGY, 2007, 5 (09) :1998-2010
[8]   Bistability and Oscillations in Gene Regulation Mediated by Small Noncoding RNAs [J].
Liu, Dengyu ;
Chang, Xiao ;
Liu, Zengrong ;
Chen, Luonan ;
Wang, Ruiqi .
PLOS ONE, 2011, 6 (03)
[9]   A quantitative comparison of sRNA-based and protein-based gene regulation [J].
Mehta, Pankaj ;
Goyal, Sidhartha ;
Wingreen, Ned S. .
MOLECULAR SYSTEMS BIOLOGY, 2008, 4 (1)
[10]   Stability and Hopf bifurcation in a three-species system with feedback delays [J].
Meng, Xin-You ;
Huo, Hai-Feng ;
Zhang, Xiao-Bing ;
Xiang, Hong .
NONLINEAR DYNAMICS, 2011, 64 (04) :349-364