Pseudomonas coleopterorum sp nov., a cellulase-producing bacterium isolated from the bark beetle Hylesinus fraxini

被引:36
作者
Menendez, Esther [1 ]
Ramirez-Bahena, Martha H. [2 ]
Fabryova, Anna [3 ]
Igual, Jose M. [2 ]
Benada, Oldrich [3 ]
Mateos, Pedro F. [1 ]
Peix, Alvaro [2 ]
Kolarik, Miroslav [3 ]
Garcia-Fraile, Paula [3 ]
机构
[1] Univ Salamanca, Dept Genet & Microbiol, E-37008 Salamanca, Spain
[2] IRNASA CSIC, Inst Nat Resources & Agrobiol, Salamanca, Spain
[3] Acad Sci Czech Republ, Inst Microbiol, Prague, Czech Republic
关键词
DENDROCTONUS-RHIZOPHAGUS; GENUS PSEUDOMONAS; CLUSTAL-W; GUT; PHYLOGENY; SEQUENCES; ALIGNMENT;
D O I
10.1099/ijs.0.000344
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
We isolated a strain coded Esc2Am(T) during a study focused on the microbial diversity of adult specimens of the bark beetle Hylesinus fraxini. Its 16S rRNA gene sequence had 99.4 % similarity with respect to its closest relative, Pseudomonas rhizosphaerae IH5(T). The analysis of partial sequences of the housekeeping genes rpoB, rpoD and gyrB confirmed that strain Esc2Am(T) formed a cluster with P. rhizosphaerae IH5(T) clearly separated from the remaining species of the genus Pseudomonas. Strain Esc2Am(T) had polar flagella and could grow at temperatures from 4 degrees C to 30 degrees C. The respiratory quinone was 09 and the main fatty acids were C-16 : 0, C-18 (:) (1)omega 7c and/or C-18 (:) (1)omega 6c in summed feature 8 and C-16 (:) (1)omega 7c and/or C-18 : 1 omega 6c in summed feature 3. DNA DNA hybridization results showed 51 % relatedness with respect to P. rhizosphaerae IH5(T). Oxidase, catalase and urease-positive, the arginine dihydrolase system was present but nitrate reduction and beta-galactosidase production were negative. Aesculin hydrolysis was positive. Based on the results from the genotypic, phenotypic and chemotaxonomic analyses, we propose the classification of strain Esc2Am(T) as representing a novel species of the genus Pseudomonas, for which we propose the name Pseudomonas coleopterorum sp. nov. The type strain is Esc2Am(T) (=LMG 28558(T)=CECT 8695(T)).
引用
收藏
页码:2852 / 2858
页数:7
相关论文
共 32 条
[1]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[2]   Draft Genome Sequence of Pseudomonas sp Strain Ag1, Isolated from the Midgut of the Malaria Mosquito Anopheles gambiae [J].
Alvarez, Celeste ;
Kukutla, Phanidhar ;
Jiang, Jinjin ;
Yu, Wanqin ;
Xu, Jiannong .
JOURNAL OF BACTERIOLOGY, 2012, 194 (19) :5449-5449
[3]   Pyrosequencing Reveals the Predominance of Pseudomonadaceae in Gut Microbiome of a Gall Midge [J].
Bansal, Raman ;
Hulbert, Scot H. ;
Reese, John C. ;
Whitworth, Robert J. ;
Stuart, Jeffrey J. ;
Chen, Ming-Shun .
PATHOGENS, 2014, 3 (02) :459-472
[4]   Pseudomonas otitidis sp nov., isolated from patients with otic infections [J].
Clark, LL ;
Dajcs, JJ ;
McLean, CH ;
Bartell, JG ;
Stroman, DW .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2006, 56 :709-714
[5]  
DOETSCH R.N., 1981, MANUAL METHODS MICRO, P21
[6]   FLUOROMETRIC DEOXYRIBONUCLEIC ACID DEOXYRIBONUCLEIC ACID HYBRIDIZATION IN MICRODILUTION WELLS AS AN ALTERNATIVE TO MEMBRANE-FILTER HYBRIDIZATION IN WHICH RADIOISOTOPES ARE USED TO DETERMINE GENETIC RELATEDNESS AMONG BACTERIAL STRAINS [J].
EZAKI, T ;
HASHIMOTO, Y ;
YABUUCHI, E .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1989, 39 (03) :224-229
[7]   Cellulolytic Bacteria Associated with the Gut of Dendroctonus armandi Larvae ( Coleoptera: Curculionidae: Scolytinae) [J].
Hu, Xia ;
Yu, Jiamin ;
Wang, Chunyan ;
Chen, Hui .
FORESTS, 2014, 5 (03) :455-465
[8]   Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species [J].
Kim, Ok-Sun ;
Cho, Yong-Joon ;
Lee, Kihyun ;
Yoon, Seok-Hwan ;
Kim, Mincheol ;
Na, Hyunsoo ;
Park, Sang-Cheol ;
Jeon, Yoon Seong ;
Lee, Jae-Hak ;
Yi, Hana ;
Won, Sungho ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 :716-721
[10]   Clustal W and clustal X version 2.0 [J].
Larkin, M. A. ;
Blackshields, G. ;
Brown, N. P. ;
Chenna, R. ;
McGettigan, P. A. ;
McWilliam, H. ;
Valentin, F. ;
Wallace, I. M. ;
Wilm, A. ;
Lopez, R. ;
Thompson, J. D. ;
Gibson, T. J. ;
Higgins, D. G. .
BIOINFORMATICS, 2007, 23 (21) :2947-2948