Potential inhibitors of the interaction between ACE2 and SARS-CoV-2 (RBD), to develop a drug

被引:45
|
作者
Benitez-Cardoza, Claudia Guadalupe [1 ]
Vique-Sanchez, Jose Luis [2 ]
机构
[1] Inst Politecn Nacl, ENMyH, Lab Invest Bioquim, Mexico City, DF, Mexico
[2] Univ Autonoma Baja California, Fac Med, Mexicali, BC, Mexico
关键词
ACE2; COVID-19; Drug by docking; Inhibitors of RBD; SARS-CoV-2; ANGIOTENSIN-CONVERTING ENZYME-2; SARS; DISCOVERY; SPIKE; IDENTIFICATION; MODEL; ENTRY;
D O I
10.1016/j.lfs.2020.117970
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Aims: The COVID-19 disease caused by the SARS-CoV-2 has become a pandemic and there are no effective treatments that reduce the contagion. It is urgent to propose new treatment options, which are more effective in the interaction between viruses and cells. In this study was to develop a search for new pharmacological compounds against the angiotensin-converting enzyme 2 (ACE2), to inhibit the interaction with SARS-CoV-2. Materials and methods: Docking, virtual screening using almost 500,000 compounds directed to interact in the region between the residues (Gln24, Asp30, His34, Tyr41, Gln42, Met82, Lys353, and Arg357) in ACE2. The average of Delta G(binding), the standard deviation value and the theoretical toxicity from compounds were analyzed. Key findings: 20 best compounds directed to interact in ACE2 with a high probability to be safe in humans, validated by web servers of prediction of ADME and toxicity (ProTox-II and PreADMET), to difficult the interaction between ACE2 and region binding domain (RBD) of SARS-CoV-2. Significance: In this study, 20 compounds were determined by docking focused on the region of interaction between ACE2 and RBD of SARS-CoV-2 was carried out. The compounds are publicly available to validate the effect in in vitro tests.
引用
收藏
页数:7
相关论文
共 50 条
  • [1] Identification of potential novel inhibitors against the SARS-CoV-2 spike protein: targeting RBD and ACE2 interaction
    Verma, Jyoti
    Rath, Pragyan Parimita
    Gourinath, Samudrala
    Subbarao, Naidu
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2025, 43 (02): : 1027 - 1037
  • [2] Synthetic α-Helical Peptides as Potential Inhibitors of the ACE2 SARS-CoV-2 Interaction
    Engelhardt, Pascal M.
    Florez-Rueda, Sebastian
    Drexelius, Marco
    Neudoerfl, Joerg-Martin
    Lauster, Daniel
    Hackenberger, Christian P. R.
    Kuehne, Ronald
    Neundorf, Ines
    Schmalz, Hans-Guenther
    CHEMBIOCHEM, 2022, 23 (17)
  • [3] CEBIT screening for inhibitors of the interaction between SARS-CoV-2 spike and ACE2
    Pei, Gaofeng
    Xu, Weifan
    Lan, Jun
    Wang, Xinquan
    Li, Pilong
    FUNDAMENTAL RESEARCH, 2022, 2 (04): : 562 - 569
  • [4] Identification of potential SARS-CoV-2 entry inhibitors by targeting the interface region between the spike RBD and human ACE2
    Gurung, Arun Bahadur
    Ali, Mohammad Ajmal
    Lee, Joongku
    Abul Farah, Mohammad
    Al-Anazi, Khalid Mashay
    JOURNAL OF INFECTION AND PUBLIC HEALTH, 2021, 14 (02) : 227 - 237
  • [5] Structure-Based Virtual Screening and Identification of Potential Inhibitors of SARS-CoV-2 S-RBD and ACE2 Interaction
    Xiong, Jiacheng
    Xiang, Yusen
    Huang, Ziming
    Liu, Xiaohong
    Wang, Mengge
    Ge, Guangbo
    Chen, Hongzhuan
    Xu, Jianrong
    Zheng, Mingyue
    Chen, Lili
    FRONTIERS IN CHEMISTRY, 2021, 9
  • [6] Exploring the Role of Glycans in the Interaction of SARS-CoV-2 RBD and Human Receptor ACE2
    Nguyen, Kien
    Chakraborty, Srirupa
    Mansbach, Rachael A.
    Korber, Bette
    Gnanakaran, Sandrasegaram
    VIRUSES-BASEL, 2021, 13 (05):
  • [7] Exploring the Role of Glycans in the Interaction of SARS-CoV-2 RBD and Human Receptor ACE2
    Kien Nguyen
    Chakraborty, Srirupa
    Mansbach, Rachael A.
    Manrique, Pedro D.
    Korber, Bette
    Gnanakaran, Sandrasegaram
    BIOPHYSICAL JOURNAL, 2021, 120 (03) : 15A - 15A
  • [8] Neutralizing nanobodies bind SARS-CoV-2 spike RBD and block interaction with ACE2
    Jiandong Huo
    Audrey Le Bas
    Reinis R. Ruza
    Helen M. E. Duyvesteyn
    Halina Mikolajek
    Tomas Malinauskas
    Tiong Kit Tan
    Pramila Rijal
    Maud Dumoux
    Philip N. Ward
    Jingshan Ren
    Daming Zhou
    Peter J. Harrison
    Miriam Weckener
    Daniel K. Clare
    Vinod K. Vogirala
    Julika Radecke
    Lucile Moynié
    Yuguang Zhao
    Javier Gilbert-Jaramillo
    Michael L. Knight
    Julia A. Tree
    Karen R. Buttigieg
    Naomi Coombes
    Michael J. Elmore
    Miles W. Carroll
    Loic Carrique
    Pranav N. M. Shah
    William James
    Alain R. Townsend
    David I. Stuart
    Raymond J. Owens
    James H. Naismith
    Nature Structural & Molecular Biology, 2020, 27 : 846 - 854
  • [9] Neutralizing nanobodies bind SARS-CoV-2 spike RBD and block interaction with ACE2
    Huo, Jiangdong
    Le Bas, Audrey
    Ruza, Reinis R.
    Duyvesteyn, Helen M. E.
    Mikolajek, Halina
    Malinauskas, Tomas
    Tan, Tiong Kit
    Rijal, Pramila
    Dumoux, Maud
    Ward, Philip N.
    Ren, Jingshan
    Zhou, Daming
    Harrison, Peter J.
    Weckener, Miriam
    Clare, Daniel K.
    Vogirala, Vinod K.
    Radecke, Julika
    Moynie, Lucile
    Zhao, Yuguang
    Gilbert-Jaramillo, Javier
    Knight, Michael L.
    Tree, Julia A.
    Buttigieg, Karen R.
    Coombes, Naomi
    Elmore, Michael J.
    Carroll, Miles W.
    Carrique, Loic
    Shah, Pranav N. M.
    James, William
    Townsend, Alain R.
    Stuart, David, I
    Owens, Raymond J.
    Naismith, James H.
    NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2020, 27 (09) : 846 - +
  • [10] RBD Double Mutations of SARS-CoV-2 Strains Increase Transmissibility through Enhanced Interaction between RBD and ACE2 Receptor
    Sinha, Siddharth
    Tam, Benjamin
    Wang, San Ming
    VIRUSES-BASEL, 2022, 14 (01):