Unraveling Cellulose Microfibrils: A Twisted Tale

被引:64
作者
Hadden, Jodi A. [1 ]
French, Alfred D. [2 ]
Woods, Robert J. [1 ,3 ]
机构
[1] Univ Georgia, Complex Carbohydrate Res Ctr, Athens, GA 30602 USA
[2] USDA, So Reg Res Ctr, New Orleans, LA 70124 USA
[3] Natl Univ Ireland, Sch Chem, Galway, Ireland
基金
爱尔兰科学基金会;
关键词
cellulose; microfibril twist; molecular dynamics; GLYCAM; MOLECULAR-DYNAMICS SIMULATIONS; HYDROGEN-BONDING SYSTEM; GENERALIZED BORN MODEL; SYNCHROTRON X-RAY; CRYSTALLINE CELLULOSE; ATOMIC CHARGES; WATER; SOLVATION; INTERFACE; BEHAVIOR;
D O I
10.1002/bip.22279
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Molecular dynamics (MD) simulations of cellulose microfibrils are pertinent to the paper, textile, and biofuels industries for their unique capacity to characterize dynamic behavior and atomic-level interactions with solvent molecules and cellulase enzymes. While highresolution crystallographic data have established a solid basis for computational analysis of cellulose, previous work has demonstrated a tendency for modeled microfibrils to diverge from the linear experimental structure and adopt a twisted conformation. Here, we investigate the dependence of this twisting behavior on computational approximations and establish the theoretical basis for its occurrence. We examine the role of solvent, the effect of nonbonded force field parameters [partial charges and van der Waals (vdW) contributions], and the use of explicitly modeled oxygen lone pairs in both the solute and solvent. Findings suggest that microfibril twisting is favored by vdW interactions, and counteracted by both intrachain hydrogen bonds and solvent effects at the microfibril surface. (C) 2013 Wiley Periodicals, Inc.
引用
收藏
页码:746 / 756
页数:11
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