Metal vs. chalcogen competition in the catalytic mechanism of cysteine dioxygenase

被引:5
作者
Che, Xin [1 ]
Gao, Jun [1 ,2 ]
Liu, Yongjun [1 ]
Liu, Chengbu [1 ,2 ]
机构
[1] Shandong Univ, Sch Chem & Chem Engn, Inst Theoret Chem, Key Lab Colloid & Interface Chem,Minist Educ, Jinan 250100, Peoples R China
[2] Shandong Univ, Key Lab Theoret & Computat Chem Univ Shandong, Jinan 250100, Peoples R China
基金
中国国家自然科学基金;
关键词
Non-heme; Cysteine; Selenocysteine; Donation of electron density; Oxidation state; 2-HIS-1-CARBOXYLATE FACIAL TRIAD; HEME THIOLATE LIGAND; ACTIVE-SITES; MOLECULAR CALCULATIONS; CRYSTAL-STRUCTURE; S-OXYGENATION; IRON; COMPLEXES; ACTIVATION; MODELS;
D O I
10.1016/j.jinorgbio.2013.01.008
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Why the cysteine dioxygenase (CDO) cannot catalyze the oxidation of selenocysteine (Sec) but that of cysteine (Cys) is still an open question. In order to solve this question, the CDO model complex, the active site of CDO, and their selenium-substituted complexes have been selected as the computational models in this work. The stepwise donation of electron density during the first two reaction steps has been explored. In the first step, the electron density-donor ability of Se to donate to Fe is stronger than that of S; in the second step, S has the better electron density-donor ability to donate to O(2) than Se. Under the influence, in the Cys-bound complexes, the change of the oxidation state for the Fe center is II -> III -> II, while the Fe center in the Sec-bound complexes remains in the II oxidation state throughout. Considering that the ferric-superoxo species is an active oxidant and exhibits high reactivity in such reaction, it is speculated that the valence change of the Fe center makes the Cys-bound complexes effectively catalyze the oxidation of Cys, while the Sec-bound complexes cannot catalyze the oxidation of Sec. The competition for donation of electron density determines the valence change and the reaction ability. (C) 2013 Elsevier Inc. All rights reserved.
引用
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页码:1 / 7
页数:7
相关论文
共 65 条
[1]   The mechanism of cysteine oxygenation by cysteine dioxygenase enzymes [J].
Aluri, Swathi ;
de Visser, Sam P. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (48) :14846-+
[2]   Arene coordination in bis(imino)pyridine iron complexes: Identification of catalyst deactivation pathways in iron-catalyzed hydrogenation and hydrosilation [J].
Archer, Andrew M. ;
Bouwkamp, Marco W. ;
Cortez, Maria-Patricia ;
Lobkovsky, Emil ;
Chirik, Paul J. .
ORGANOMETALLICS, 2006, 25 (18) :4269-4278
[3]   Roles of the proximal heme thiolate ligand in cytochrome P450cam [J].
Auclair, K ;
Moënne-Loccoz, P ;
de Montellano, PRO .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (21) :4877-4885
[4]   O2 Activation by Bis(imino)pyridine Iron(II)-Thiolate Complexes [J].
Badiei, Yosra M. ;
Siegler, Maxime A. ;
Goldberg, David P. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2011, 133 (05) :1274-1277
[5]   Preparation and molecular and electronic structures of iron(0) dinitrogen and silane complexes and their application to catalytic hydrogenation and hydrosilation [J].
Bart, SC ;
Lobkovsky, E ;
Chirik, PJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (42) :13794-13807
[6]   Hydride-Containing Models for the Active Site of the Nickel-Iron Hydrogenases [J].
Barton, Bryan E. ;
Rauchfuss, Thomas B. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2010, 132 (42) :14877-14885
[7]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[8]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[9]   SELENOCYSTEINE - THE 21ST AMINO-ACID [J].
BOCK, A ;
FORCHHAMMER, K ;
HEIDER, J ;
LEINFELDER, W ;
SAWERS, G ;
VEPREK, B ;
ZINONI, F .
MOLECULAR MICROBIOLOGY, 1991, 5 (03) :515-520
[10]   Novel olefin polymerization catalysts based on iron and cobalt [J].
Britovsek, GJP ;
Gibson, VC ;
Kimberley, BS ;
Maddox, PJ ;
McTavish, SJ ;
Solan, GA ;
White, AJP ;
Williams, DJ .
CHEMICAL COMMUNICATIONS, 1998, (07) :849-850