Crystallization and preliminary structure determination of the transfer protein TraM from the Gram-positive conjugative plasmid pIP501

被引:6
作者
Goessweiner-Mohr, Nikolaus [1 ]
Grumet, Lukas [1 ]
Pavkov-Keller, Tea [1 ]
Birner-Gruenberger, Ruth [2 ,3 ]
Grohmann, Elisabeth [4 ]
Keller, Walter [1 ]
机构
[1] Karl Franzens Univ Graz, Inst Mol Biosci, A-8010 Graz, Styria, Austria
[2] Med Univ Graz, Inst Pathol, A-8010 Graz, Styria, Austria
[3] Med Univ Graz, Med Res Ctr, Core Facil Mass Spectrometry, A-8010 Graz, Styria, Austria
[4] Univ Med Ctr Freiburg, Div Infect Dis, D-79106 Freiburg, Germany
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2013年 / 69卷
基金
奥地利科学基金会;
关键词
SECRETION-LIKE SYSTEM; DNA; PHENIX; DIVERSITY; COMPLEX; BINDING; 2-STEP;
D O I
10.1107/S1744309113000134
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The major means of horizontal gene spread (e. g. of antibiotic resistance) is conjugative plasmid transfer. It presents a serious threat especially for hospitalized and immuno-suppressed patients, as it can lead to the accelerated spread of bacteria with multiple antibiotic resistances. Detailed information about the process is available only for bacteria of Gram-negative (G-) origin and little is known about the corresponding mechanisms in Gram-positive (G+) bacteria. Here we present the purification, biophysical characterization, crystallization and preliminary structure determination of the TraM C-terminal domain (TraM Delta, comprising residues 190-322 of the full-length protein), a putative transfer protein from the G+ conjugative model plasmid pIP501. The crystals diffracted to 2.5 angstrom resolution and belonged to space group P1, with unit-cell parameters a = 39.21, b = 54.98, c = 93.47 angstrom, alpha = 89.91, beta = 86.44, gamma = 78.63 degrees and six molecules per asymmetric unit. The preliminary structure was solved by selenomethionine single-wavelength anomalous diffraction.
引用
收藏
页码:178 / 183
页数:6
相关论文
共 35 条
[1]   A type IV-secretion-like system is required for conjugative DNA transport of broad-host-range plasmid pIP501 in gram-positive bacteria [J].
Abajy, Mohammad Y. ;
Kopec, Jolanta ;
Schiwon, Katarzyna ;
Burzynski, Michal ;
Doering, Mike ;
Bohn, Christine ;
Grohmann, Elisabeth .
JOURNAL OF BACTERIOLOGY, 2007, 189 (06) :2487-2496
[2]   PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution [J].
Adams, Paul D. ;
Afonine, Pavel V. ;
Bunkoczi, Gabor ;
Chen, Vincent B. ;
Davis, Ian W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Hung, Li-Wei ;
Kapral, Gary J. ;
Grosse-Kunstleve, Ralf W. ;
McCoy, Airlie J. ;
Moriarty, Nigel W. ;
Oeffner, Robert ;
Read, Randy J. ;
Richardson, David C. ;
Richardson, Jane S. ;
Terwilliger, Thomas C. ;
Zwart, Peter H. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :213-221
[3]   Biological Diversity of Prokaryotic Type IV Secretion Systems [J].
Alvarez-Martinez, Cristina E. ;
Christie, Peter J. .
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 2009, 73 (04) :775-808
[4]   The versatile bacterial type IV secretion systems [J].
Cascales, E ;
Christie, PJ .
NATURE REVIEWS MICROBIOLOGY, 2003, 1 (02) :137-149
[5]   MICROBATCH CRYSTALLIZATION UNDER OIL - A NEW TECHNIQUE ALLOWING MANY SMALL-VOLUME CRYSTALLIZATION TRIALS [J].
CHAYEN, NE ;
STEWART, PDS ;
BLOW, DM .
JOURNAL OF CRYSTAL GROWTH, 1992, 122 (1-4) :176-180
[6]  
Clewell Don B, 2011, Mob Genet Elements, V1, P38
[7]   A preliminary solubility screen used to improve crystallization trials:: crystallization and preliminary X-ray structure determination of Aeropyrum pernix flap endonuclease-1 [J].
Collins, BK ;
Tomanicek, SJ ;
Lyamicheva, N ;
Kaiser, MW ;
Mueser, TC .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :1674-1678
[8]   The Buccaneer software for automated model building.: 1.: Tracing protein chains [J].
Cowtan, Kevin .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2006, 62 :1002-1011
[9]   Conjugative DNA metabolism in Gram-negative bacteria [J].
de la Cruz, Fernando ;
Frost, Laura S. ;
Meyer, Richard J. ;
Zechner, Ellen L. .
FEMS MICROBIOLOGY REVIEWS, 2010, 34 (01) :18-40
[10]   Thermofluor-based high-throughput stability optimization of proteins for structural studies [J].
Ericsson, Ulrika B. ;
Hallberg, B. Martin ;
DeTitta, George T. ;
Dekker, Niek ;
Nordlund, Par .
ANALYTICAL BIOCHEMISTRY, 2006, 357 (02) :289-298