hot springs;
thermophiles;
microbial ecology;
rRNA amplicons;
biogeography;
COMMUNITY STRUCTURE;
GEN;
NOV;
SULFIDE;
EVOLUTION;
ARCHAEAL;
INSIGHTS;
GEOCHEMISTRY;
POPULATIONS;
ADAPTATION;
DYNAMICS;
D O I:
10.3389/fmicb.2020.01625
中图分类号:
Q93 [微生物学];
学科分类号:
071005 ;
100705 ;
摘要:
Geothermal hot springs are a natural setting to study microbial adaptation to a wide range of temperatures reaching up to boiling. Temperature gradients lead to distinct microbial communities that inhabit their optimum niches. We sampled three alkaline, high temperature (80-100 degrees C) hot springs in Yellowstone and Iceland that had cooling outflows and whose microbial communities had not been studied previously. The microbial composition in sediments and mats was determined by DNA sequencing of rRNA gene amplicons. Over three dozen phyla of Archaea and Bacteria were identified, representing over 1700 distinct organisms. We observed a significant non-linear reduction in the number of microbial taxa as the temperature increased from warm (38 degrees C) to boiling. At high taxonomic levels, the community structure was similar between the Yellowstone and Iceland hot springs. We identified potential endemism at the genus level, especially in thermophilic phototrophs, which may have been potentially driven by distinct environmental conditions and dispersal limitations.
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Amir, Amnon
McDonald, Daniel
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
McDonald, Daniel
Navas-Molina, Jose A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Navas-Molina, Jose A.
Debelius, Justine
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Debelius, Justine
Morton, James T.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Morton, James T.
Hyde, Embriette
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Hyde, Embriette
Robbins-Pianka, Adam
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado Boulder, Dept Comp Sci, Boulder, CO USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Robbins-Pianka, Adam
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Univ Calif San Diego, Dept Comp Sci & Engn, La Jolla, CA 92093 USA
Univ Calif San Diego, Ctr Microbiome Innovat, San Diego, CA 92103 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
机构:
Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USAUniv Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
Bates, Scott T.
Berg-Lyons, Donna
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USAUniv Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
Berg-Lyons, Donna
Caporaso, J. Gregory
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USAUniv Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
Caporaso, J. Gregory
Walters, William A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USAUniv Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
Walters, William A.
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA
Univ Colorado, Howard Hughes Med Inst, Boulder, CO 80309 USAUniv Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
Knight, Rob
Fierer, Noah
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
Univ Colorado, Dept Ecol & Evolutionary Biol, Boulder, CO 80309 USAUniv Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
机构:
Montana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USA
Univ North Alabama, Dept Biol, Florence, AL 35632 USAMontana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USA
Becraft, Eric D.
Wood, Jason M.
论文数: 0引用数: 0
h-index: 0
机构:
Montana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USA
CALTECH, Jet Prop Lab, Biotechnol & Planetary Protect Grp, Pasadena, CA USAMontana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USA
Wood, Jason M.
Cohan, Frederick M.
论文数: 0引用数: 0
h-index: 0
机构:
Wesleyan Univ, Dept Biol, Middletown, CT 06459 USAMontana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USA
Cohan, Frederick M.
Ward, David M.
论文数: 0引用数: 0
h-index: 0
机构:
Montana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USAMontana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USA
机构:
No Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
Bokulich, Nicholas A.
Dillon, Matthew R.
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
Dillon, Matthew R.
Zhang, Yilong
论文数: 0引用数: 0
h-index: 0
机构:
Merck & Co Inc, Kenilworth, NJ USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
Zhang, Yilong
论文数: 引用数:
h-index:
机构:
Rideout, Jai Ram
Bolyen, Evan
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
Bolyen, Evan
Li, Huilin
论文数: 0引用数: 0
h-index: 0
机构:
NYU, Dept Populat Hlth Biostat, Langone Med Ctr, New York, NY USA
NYU, Dept Environm Med, Langone Med Ctr, 550 1St Ave, New York, NY 10016 USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
Li, Huilin
Albert, Paul S.
论文数: 0引用数: 0
h-index: 0
机构:
NCI, Biostat Branch, Div Canc Epidemiol & Genet, Rockville, MD USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
Albert, Paul S.
Caporaso, J. Gregory
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
No Arizona Univ, Dept Biol Sci, Flagstaff, AZ 86011 USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
机构:
No Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USANo Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA
Bokulich, Nicholas A.
Kaehler, Benjamin D.
论文数: 0引用数: 0
h-index: 0
机构:
Australian Natl Univ, Res Sch Biol, 46 Sullivans Creek Rd, Acton, ACT 2601, AustraliaNo Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA
Kaehler, Benjamin D.
论文数: 引用数:
h-index:
机构:
Rideout, Jai Ram
论文数: 引用数:
h-index:
机构:
Dillon, Matthew
Bolyen, Evan
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USANo Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA
Bolyen, Evan
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Univ Calif San Diego, Dept Comp Sci & Engn, La Jolla, CA 92093 USA
Univ Calif San Diego, Ctr Microbiome Innovat, La Jolla, CA 92093 USANo Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA
Knight, Rob
Huttley, Gavin A.
论文数: 0引用数: 0
h-index: 0
机构:
Australian Natl Univ, Res Sch Biol, 46 Sullivans Creek Rd, Acton, ACT 2601, AustraliaNo Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA
Huttley, Gavin A.
Caporaso, J. Gregory
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA
No Arizona Univ, Dept Biol Sci, 1298 S Knoles Dr,Bldg 56,3rd Floor, Flagstaff, AZ USANo Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Amir, Amnon
McDonald, Daniel
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
McDonald, Daniel
Navas-Molina, Jose A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Navas-Molina, Jose A.
Debelius, Justine
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Debelius, Justine
Morton, James T.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Morton, James T.
Hyde, Embriette
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Hyde, Embriette
Robbins-Pianka, Adam
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado Boulder, Dept Comp Sci, Boulder, CO USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Robbins-Pianka, Adam
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Univ Calif San Diego, Dept Comp Sci & Engn, La Jolla, CA 92093 USA
Univ Calif San Diego, Ctr Microbiome Innovat, San Diego, CA 92103 USAUniv Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
机构:
Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USAUniv Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
Bates, Scott T.
Berg-Lyons, Donna
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USAUniv Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
Berg-Lyons, Donna
Caporaso, J. Gregory
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USAUniv Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
Caporaso, J. Gregory
Walters, William A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USAUniv Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
Walters, William A.
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA
Univ Colorado, Howard Hughes Med Inst, Boulder, CO 80309 USAUniv Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
Knight, Rob
Fierer, Noah
论文数: 0引用数: 0
h-index: 0
机构:
Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
Univ Colorado, Dept Ecol & Evolutionary Biol, Boulder, CO 80309 USAUniv Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
机构:
Montana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USA
Univ North Alabama, Dept Biol, Florence, AL 35632 USAMontana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USA
Becraft, Eric D.
Wood, Jason M.
论文数: 0引用数: 0
h-index: 0
机构:
Montana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USA
CALTECH, Jet Prop Lab, Biotechnol & Planetary Protect Grp, Pasadena, CA USAMontana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USA
Wood, Jason M.
Cohan, Frederick M.
论文数: 0引用数: 0
h-index: 0
机构:
Wesleyan Univ, Dept Biol, Middletown, CT 06459 USAMontana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USA
Cohan, Frederick M.
Ward, David M.
论文数: 0引用数: 0
h-index: 0
机构:
Montana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USAMontana State Univ, Dept Land Resources & Environm Sci, Bozeman, MT 59717 USA
机构:
No Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
Bokulich, Nicholas A.
Dillon, Matthew R.
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
Dillon, Matthew R.
Zhang, Yilong
论文数: 0引用数: 0
h-index: 0
机构:
Merck & Co Inc, Kenilworth, NJ USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
Zhang, Yilong
论文数: 引用数:
h-index:
机构:
Rideout, Jai Ram
Bolyen, Evan
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
Bolyen, Evan
Li, Huilin
论文数: 0引用数: 0
h-index: 0
机构:
NYU, Dept Populat Hlth Biostat, Langone Med Ctr, New York, NY USA
NYU, Dept Environm Med, Langone Med Ctr, 550 1St Ave, New York, NY 10016 USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
Li, Huilin
Albert, Paul S.
论文数: 0引用数: 0
h-index: 0
机构:
NCI, Biostat Branch, Div Canc Epidemiol & Genet, Rockville, MD USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
Albert, Paul S.
Caporaso, J. Gregory
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
No Arizona Univ, Dept Biol Sci, Flagstaff, AZ 86011 USANo Arizona Univ, Pathogen & Microbiome Inst, Flagstaff, AZ 86011 USA
机构:
No Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USANo Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA
Bokulich, Nicholas A.
Kaehler, Benjamin D.
论文数: 0引用数: 0
h-index: 0
机构:
Australian Natl Univ, Res Sch Biol, 46 Sullivans Creek Rd, Acton, ACT 2601, AustraliaNo Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA
Kaehler, Benjamin D.
论文数: 引用数:
h-index:
机构:
Rideout, Jai Ram
论文数: 引用数:
h-index:
机构:
Dillon, Matthew
Bolyen, Evan
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USANo Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA
Bolyen, Evan
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Univ Calif San Diego, Dept Comp Sci & Engn, La Jolla, CA 92093 USA
Univ Calif San Diego, Ctr Microbiome Innovat, La Jolla, CA 92093 USANo Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA
Knight, Rob
Huttley, Gavin A.
论文数: 0引用数: 0
h-index: 0
机构:
Australian Natl Univ, Res Sch Biol, 46 Sullivans Creek Rd, Acton, ACT 2601, AustraliaNo Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA
Huttley, Gavin A.
Caporaso, J. Gregory
论文数: 0引用数: 0
h-index: 0
机构:
No Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA
No Arizona Univ, Dept Biol Sci, 1298 S Knoles Dr,Bldg 56,3rd Floor, Flagstaff, AZ USANo Arizona Univ, Pathogen & Microbiome Inst, POB 4073, Flagstaff, AZ 86011 USA