TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

被引：2168

作者：

Schmidt, HA

Strimmer, K

Vingron, M

von Haeseler, A

机构：

[1] Max Planck Inst Evolutionare Anthropol, D-04103 Leipzig, Germany

[2] Max Planck Inst Mol Genet, D-14195 Berlin, Germany

[3] Univ Oxford, Dept Zool, Oxford OX1 3PS, England

来源：

BIOINFORMATICS | 2002年 / 18卷 / 03期

关键词：

D O I：

10.1093/bioinformatics/18.3.502

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

TREE-PUZZLE is a program package for quartet-based maximum-likelihood phylogenetic analysis (formerly PUZZLE, Strimmer and von Haeseler, Mol Biol. Evol., 13, 964-969, 1996) that provides methods for reconstruction, comparison, and testing of trees and models on DNA as well as protein sequences. To reduce waiting time for larger datasets the tree reconstruction part of the software has been parallelized using message passing that runs on clusters of workstations as well as parallel computers.

引用

页码：502 / 504

页数：3

共 23 条

[1]

Adachi J, 1996, J MOL EVOL, V42, P459

[2]

[Anonymous], 1978, ATLAS PROTEIN SEQUEN

[3] PHYLOGENIES FROM MOLECULAR SEQUENCES - INFERENCE AND RELIABILITY [J].